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[179765_at]

Description C09E7.6 /REP_DB=WormBase Gene ID /WP=CE25770 /TR=Q9N5Y8 /GB=AAF60369.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 54      4grp_high_8_8 > 27      6grp_total > 45      4grp_total > 37      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 98.6
(-0.5)
P 		145.9
(3)
P 		65.3
(-3)
A 		72.1
(-2.5)
P 		81
B 90.1
(3)
P 		65.9
(-3)
P 		74.6
(-0.8)
P 		84.4
(1.6)
P 		24
C 140.9
(3)
P 		111
(0.1)
P 		79.2
(-3)
P 		127.9
(1.7)
P 		62
avr 109.9
(3) 		107.6
(2.6) 		73
(-3) 		94.8
(0.5) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 103.6
(0.1)
P 		141.5
(3)
P 		106.4
(0.3)
P 		110.4
(0.6)
P 		64.2
(-3)
P 		81.8
(-1.6)
P 		77
B 126.2
(3)
P 		98
(0.1)
P 		125.6
(2.9)
P 		66.9
(-3)
P 		98.6
(0.2)
P 		78.3
(-1.8)
P 		59
C 89.2
(-0.6)
P 		75.6
(-1.2)
A 		129.4
(1.3)
P 		114.7
(0.6)
P 		36.1
(-3)
P 		166.3
(3)
P 		130
avr 106.3
(1.4) 		105
(1.3) 		120.5
(3) 		97.3
(0.4) 		66.3
(-3) 		108.8
(1.7) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 35.9
(3)
P 		31.7
(2)
P 		17.1
(-1.5)
A 		10.6
(-3)
P 		25
B 28.7
(3)
P 		16.3
(-3)
P 		17.3
(-2.5)
P 		18
(-2.2)
P 		12
C 46.7
(3)
P 		31.9
(-0.5)
P 		27.6
(-1.6)
P 		21.6
(-3)
P 		25
avr 37.1
(3) 		26.6
(-0.1) 		20.7
(-1.8) 		16.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 19.1
(-3)
P 		50.3
(3)
P 		23.2
(-2.2)
P 		28
(-1.3)
P 		19.4
(-2.9)
P 		19.9
(-2.8)
P 		31
B 43.9
(3)
P 		32.6
(0.4)
P 		30.5
(-0.1)
P 		17.7
(-3)
P 		40.1
(2.1)
P 		29.2
(-0.4)
P 		26
C 33.1
(-0.1)
P 		23.1
(-1.4)
A 		32.9
(-0.1)
P 		23.1
(-1.4)
P 		11.7
(-3)
P 		55.7
(3)
P 		44
avr 32
(1.4) 		35.3
(3) 		28.9
(-0.1) 		22.9
(-3) 		23.7
(-2.6) 		34.9
(2.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179765_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6073
Sequence Type Exemplar sequence
Representative Public ID C09E7.6 NCBI
Target Description C09E7.6 /REP_DB=WormBase Gene ID /WP=CE25770 /TR=Q9N5Y8 /GB=AAF60369.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066043 NCBI Caenorhabditis elegans C09E7.9 (C09E7.9) mRNA, complete cds. 11/11 A 
SNAP00000042848 ENSEMBL cdna:SNAP chromosome:CEL140:III:6541573:6546155:-1 11/11 None
GENEFINDER00000042853 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6541573:6551164:-1 11/11 None
C09E7.9 ENSEMBL cdna:known chromosome:CEL140:III:6541543:6545108:-1 gene:C09E7.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6541571-6546154(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09E7.9
Entrez Gene 3565844 Entrez gene
SwissProt Q95YE3 EMBL-EBI
WormBase CE29078 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00855 Hypothetical protein C09E7.9 [Caenorhabditis elegans] ref|NP_498444.1| C09E7.9 [Caenorhabditis elegans] 0.0
blast AAN63459 Hypothetical protein C09E7.8b [Caenorhabditis elegans] ref|NP_871695.1| C09E7.8b [Caenorhabditis elegans] 0.0
blast AAN63458 Hypothetical protein C09E7.8a [Caenorhabditis elegans] ref|NP_498447.2| C09E7.8a [Caenorhabditis elegans] 0.0
blast AAF60368 Hypothetical protein C09E7.7 [Caenorhabditis elegans] ref|NP_498446.1| C09E7.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.5E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.5E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.5E-10
Sequence
Target Sequence 
>C. ELEGANS:179765_AT
gatcatcagatctagaacaacttccagaagctcctaaattctcgaacgagttcatgagat
tctacagaaatgcgacgggaaaacaacctttgacgtcttcaagttcttcatctgcaaacc
ctcgttccacacatattgaaggttcttcgatttctacaatgccatcaacttcatctcgcg
gaaatgttcaacaccactctggatctgctgttagaggacaatcaattactcccactggat
tatctcaagttccaatgagtccgagaaaactgtttagtcagccagatatagttacggctt
ctgtcccatcaactgagttggatgatacagaatgtgcaatctgtttggatgaaatgacca
actttaaggaaactatcaaatgtgaatgtagacgccgtttccatctgaaatgtgcaacta
aatggcttaatgaaaagagagaatgtccaacttgccgtaaattgcttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATCAGATCTAGAACAACTTCC 576 419 2507 Antisense
TAGAACAACTTCCAGAAGCTCCTAA 27 653 2519 Antisense
CAGAAGCTCCTAAATTCTCGAACGA 321 205 2531 Antisense
ACAACCTTTGACGTCTTCAAGTTCT 483 113 2589 Antisense
TCAAGTTCTTCATCTGCAAACCCTC 69 633 2605 Antisense
ACCCTCGTTCCACACATATTGAAGG 559 85 2624 Antisense
CTTCTGTCCCATCAACTGAGTTGGA 651 219 2804 Antisense
AATGTAGACGCCGTTTCCATCTGAA 682 163 2891 Antisense
GAAATGTGCAACTAAATGGCTTAAT 342 361 2913 Antisense
GAGAGAATGTCCAACTTGCCGTAAA 466 393 2943 Antisense
TCCAACTTGCCGTAAATTGCTTCTC 80 589 2952 Antisense
Sequence Source Affymetrix Proprietary Database