[Home] | [Total List]

[179764_s_at]

Description Y62H9A.3 /REP_DB=WormBase Gene ID /WP=CE19239 /TR=Q9XWT5 /GB=CAA21560.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 59.1
(-0.3)
A 		79.2
(0.7)
A 		5
(-3)
A 		124.4
(3)
A 		119
B 39.2
(-1.9)
A 		54.2
(-0.1)
A 		30.2
(-3)
A 		79.6
(3)
A 		49
C 90
(3)
A 		49.4
(-2.4)
A 		60.1
(-0.9)
A 		44.5
(-3)
A 		46
avr 62.8
(0.6) 		60.9
(0.4) 		31.8
(-3) 		82.8
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 85.2
(-1.6)
A 		64.5
(-2.2)
A 		37.5
(-3)
A 		38.1
(-3)
A 		242.2
(3)
P 		153.1
(0.4)
A 		205
B 31.7
(-3)
A 		37
(-2.9)
A 		35
(-2.9)
A 		68.2
(-2)
A 		254.3
(3)
P 		157.9
(0.4)
A 		223
C 42.4
(-2.1)
A 		29.4
(-2.6)
A 		17.8
(-3)
A 		54.3
(-1.6)
A 		177.7
(3)
P 		156.9
(2.2)
A 		160
avr 53.1
(-2.3) 		43.6
(-2.6) 		30.1
(-3) 		53.5
(-2.3) 		224.7
(3) 		156
(0.9) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21.5
(3)
A 		17.2
(1.7)
A 		1.3
(-3)
A 		18.2
(2)
A 		20
B 12.5
(0.3)
A 		13.4
(0.8)
A 		7
(-3)
A 		17
(3)
A 		10
C 29.8
(3)
A 		14.2
(-1.2)
A 		20.9
(0.6)
A 		7.5
(-3)
A 		22
avr 21.3
(3) 		14.9
(-0.3) 		9.7
(-3) 		14.2
(-0.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 15.7
(-2.3)
A 		22.9
(-1.6)
A 		8.2
(-3)
A 		9.7
(-2.9)
A 		73.1
(3)
P 		37.3
(-0.3)
A 		65
B 11
(-2.8)
A 		12.3
(-2.8)
A 		8.5
(-3)
A 		18.1
(-2.4)
A 		103.3
(3)
P 		58.9
(0.2)
A 		95
C 15.7
(-1.7)
A 		9
(-2.5)
A 		4.5
(-3)
A 		10.9
(-2.3)
A 		57.5
(3)
P 		52.5
(2.4)
A 		53
avr 14.1
(-2.4) 		14.7
(-2.4) 		7.1
(-3) 		12.9
(-2.5) 		78
(3) 		49.6
(0.6) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179764_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17134
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.3 NCBI
Target Description Y62H9A.3 /REP_DB=WormBase Gene ID /WP=CE19239 /TR=Q9XWT5 /GB=CAA21560.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077583 NCBI Caenorhabditis elegans Y62H9A.3 (Y62H9A.3) mRNA, complete cds. 11/11 None
SNAP00000025455 ENSEMBL cdna:SNAP chromosome:CEL140:X:11879084:11879865:-1 11/11 None
GENEFINDER00000025478 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11879084:11879865:-1 11/11 None
Y62H9A.3 ENSEMBL cdna:known chromosome:CEL140:X:11879084:11879886:-1 gene:Y62H9A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11879083-11879865(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.3
Entrez Gene 181363 Entrez gene
SwissProt Q9XWT5 EMBL-EBI
WormBase CE19239 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21560 Hypothetical protein Y62H9A.3 [Caenorhabditis elegans] ref|NP_509984.1| Y62H9A.3 [Caenorhabditis elegans] 1.0E-108
blast CAE69411 Hypothetical protein CBG15573 [Caenorhabditis briggsae] 1.0E-33
blast CAA21569 Hypothetical protein Y62H9A.5 [Caenorhabditis elegans] ref|NP_509986.2| Y62H9A.5 [Caenorhabditis elegans] 2.0E-27
Sequence
Target Sequence 
>C. ELEGANS:179764_S_AT
tgtattacttgctgctgtggcttctgcagaataccagattaacgagaagtcctactcagg
tgaagttgaagttgaagactacccaagaccaacaaagaaaccaacgtactcggtgccgga
tctaggaccacttccaccagcatcatacccagttccaaatttccctaatagttggccgct
tccgccagcttcacgactagttccaattccacaagaatatccagctccgttccccccagg
accatatcctgactcagaaaatgggggatcgtatccaccacgcaactatgaagtcaaaaa
attgaaagatcttcgtggtgaaaaaattgttgaagcccgtgttagatactacacatatga
taacacccattacgccgtcatttcatgccccagaaatccaactccaggagcatacacatg
gattttggtggactcgaagaaagaaattctaccatttaatgttcctggaacagtagcgtt
gacaggaggtatcaacgttgactacttagccaaatatggaactaaaggcaaatgggaagg
aaaagatttgaccaatgataagaaacacaggttccgtcgagttggatgcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATTACTTGCTGCTGTGGCTTCT 406 561 33 Antisense
CAACGTACTCGGTGCCGGATCTAGG 210 147 134 Antisense
GCATCATACCCAGTTCCAAATTTCC 204 309 172 Antisense
CAAATTTCCCTAATAGTTGGCCGCT 202 193 188 Antisense
CTTCACGACTAGTTCCAATTCCACA 288 219 221 Antisense
TTCCACAAGAATATCCAGCTCCGTT 407 699 239 Antisense
GTATCCACCACGCAACTATGAAGTC 506 455 303 Antisense
CATATGATAACACCCATTACGCCGT 269 215 386 Antisense
CGTCATTTCATGCCCCAGAAATCCA 58 247 408 Antisense
GTATCAACGTTGACTACTTAGCCAA 568 453 521 Antisense
CAGGTTCCGTCGAGTTGGATGCCTT 291 157 600 Antisense
Sequence Source Affymetrix Proprietary Database