[Home] | [Total List]

[179761_at]

Description C32B5.4 /REP_DB=WormBase Gene ID /WP=CE08512 /TR=P91116 /GB=AAB37960.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 4.1
(-3)
A 		14.4
(-0.2)
A 		22.2
(1.9)
A 		26.1
(3)
A 		22
B 5.9
(-2.8)
A 		31.5
(1.4)
A 		4.5
(-3)
A 		41.2
(3)
P 		37
C 5.4
(-2.6)
A 		10.5
(-1.4)
A 		3.8
(-3)
A 		29.4
(3)
A 		26
avr 5.1
(-3) 		18.8
(0) 		10.2
(-1.9) 		32.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 38.9
(2.9)
A 		32.4
(1.8)
A 		39.5
(3)
P 		24.6
(0.4)
A 		8.5
(-2.3)
A 		4.5
(-3)
A 		35
B 4.2
(-2.3)
A 		12.5
(-0.4)
A 		15.2
(0.2)
A 		3.6
(-2.5)
A 		26.9
(3)
A 		1.4
(-3)
A 		26
C 20.4
(1.6)
A 		25.7
(3)
A 		5.7
(-2.2)
A 		2.6
(-3)
A 		18.8
(1.2)
A 		24.6
(2.7)
P 		23
avr 21.2
(2) 		23.5
(3) 		20.1
(1.5) 		10.3
(-3) 		18.1
(0.6) 		10.2
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-3)
A 		3.1
(-0.8)
A 		5.8
(3)
A 		3.8
(0.2)
A 		4
B 1.9
(-2.3)
A 		7.8
(2.2)
A 		1
(-3)
A 		8.8
(3)
P 		8
C 1.8
(-2.2)
A 		3
(-0.2)
A 		1.3
(-3)
A 		5
(3)
A 		4
avr 1.7
(-3) 		4.6
(1.1) 		2.7
(-1.6) 		5.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.2
(0.5)
A 		11.5
(3)
A 		8.6
(1.3)
P 		6.2
(-0.1)
A 		2.6
(-2.1)
A 		1.1
(-3)
A 		10
B 1.5
(-2.4)
A 		4.2
(-0.9)
A 		3.7
(-1.2)
A 		1
(-2.7)
A 		10.9
(3)
A 		0.5
(-3)
A 		10
C 7.6
(2.5)
A 		7.8
(2.7)
A 		1.4
(-2.3)
A 		0.5
(-3)
A 		6.1
(1.4)
A 		8.2
(3)
P 		8
avr 5.4
(0.2) 		7.8
(3) 		4.6
(-0.7) 		2.6
(-3) 		6.5
(1.5) 		3.3
(-2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4492
Sequence Type Exemplar sequence
Representative Public ID C32B5.4 NCBI
Target Description C32B5.4 /REP_DB=WormBase Gene ID /WP=CE08512 /TR=P91116 /GB=AAB37960.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061471 NCBI Caenorhabditis elegans C32B5.4 (C32B5.4) mRNA, complete cds. 11/11 None
SNAP00000042180 ENSEMBL cdna:SNAP chromosome:CEL140:II:979429:980831:1 11/11 None
GENEFINDER00000042195 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:979429:980831:1 11/11 None
C32B5.4 ENSEMBL cdna:known chromosome:CEL140:II:979937:980831:1 gene:C32B5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:979935-980830(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32B5.4
Entrez Gene 183108 Entrez gene
SwissProt P91116 EMBL-EBI
WormBase CE08512 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493872 C32B5.4 [Caenorhabditis elegans] gb|AAB37960.1| Hypothetical protein C32B5.4 [Caenorhabditis elegans] 1.0E-149
blast NP_493865 C32B5.16 [Caenorhabditis elegans] gb|AAB37971.1| Hypothetical protein C32B5.16 [Caenorhabditis elegans] 6.0E-68
blast NP_493868 C32B5.14 [Caenorhabditis elegans] gb|AAB37969.1| Hypothetical protein C32B5.14 [Caenorhabditis elegans] 1.0E-56
blast NP_493865 C32B5.16 [Caenorhabditis elegans] gb|AAB37971.1| Hypothetical protein C32B5.16 [Caenorhabditis elegans] 2.0E-45
Sequence
Target Sequence 
>C. ELEGANS:179761_AT
gctatgaagtacctgctcgggagactatttggaggaaaaactgtaaaagtgaaccatcta
gccattggttgtaaaactattcttcggattcctacaagtttcaagttgcacgttgaaaat
ctggagattctggataccaacacctataacaacatggaaactgttcgcttgatgattgaa
gcttctagtctaccattaaacatggtgaagttccgacctacaaacttcacaactaacaac
catccaattgtacgaacagctcgaatgctgtacatccacgccacatctactagaaggaga
tttagagatttcatcgaagctctggcaagactgaaaaatataagagttcatgttgaaagc
cgggatctgagctcaggttcttggtacatgacagtcttcagatgctggatgagatatggc
aagaaagttggaacttactacacgtttggtactacagaggaaactataaatagtgctatg
aaggtttttggaagactttatgggagcaggacggggtttgatgggcaaatcactataaac
ttgaagaagacttcccaagttgtcatcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATGAAGTACCTGCTCGGGAGAC 233 303 229 Antisense
TAAAACTATTCTTCGGATTCCTACA 499 639 300 Antisense
GATTGAAGCTTCTAGTCTACCATTA 291 435 402 Antisense
TTCCGACCTACAAACTTCACAACTA 449 699 439 Antisense
CAGCTCGAATGCTGTACATCCACGC 31 205 485 Antisense
ATCCACGCCACATCTACTAGAAGGA 481 39 502 Antisense
GATTTCATCGAAGCTCTGGCAAGAC 298 427 535 Antisense
GAAAGCCGGGATCTGAGCTCAGGTT 570 359 583 Antisense
GGTTCTTGGTACATGACAGTCTTCA 703 505 604 Antisense
GGAGCAGGACGGGGTTTGATGGGCA 194 519 731 Antisense
GAAGACTTCCCAAGTTGTCATCAGA 19 341 774 Antisense
Sequence Source Affymetrix Proprietary Database