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[179760_at]

Description R11D1.10 /REP_DB=WormBase Gene ID /WP=CE23927 /TR=Q21938 /GB=CAA99905.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_highest_nonorm > 72      6grp_total > 55      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 393.3
(0.2)
P 		357.6
(-0.5)
P 		235.4
(-3)
P 		530
(3)
P 		295
B 460
(2.9)
P 		258.3
(-2.8)
P 		252.5
(-3)
P 		463.2
(3)
P 		211
C 455.7
(1.2)
P 		264.9
(-2.7)
P 		249.5
(-3)
P 		542.8
(3)
P 		293
avr 436.3
(1.3) 		293.6
(-1.9) 		245.8
(-3) 		512
(3) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 463.3
(2.3)
P 		456.4
(2)
P 		480.6
(3)
P 		411.4
(0.2)
P 		331
(-3)
P 		479.3
(2.9)
P 		150
B 448.3
(0.1)
P 		376.7
(-1.7)
P 		563.1
(3)
P 		435.3
(-0.2)
P 		323.8
(-3)
P 		499
(1.4)
P 		239
C 310.5
(-2)
P 		433.9
(0)
P 		489.2
(1)
P 		527.2
(1.6)
P 		253.5
(-3)
P 		609.6
(3)
P 		356
avr 407.4
(-0.2) 		422.3
(0.2) 		511
(2.5) 		458
(1.1) 		302.8
(-3) 		529.3
(3) 		227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 143.2
(3)
P 		77.6
(-1.8)
P 		61.5
(-3)
P 		77.6
(-1.8)
P 		82
B 146.7
(3)
P 		63.8
(-2.6)
P 		58.5
(-3)
P 		98.7
(-0.3)
P 		88
C 150.8
(3)
P 		76.2
(-3)
P 		87
(-2.1)
P 		91.5
(-1.8)
P 		75
avr 146.9
(3) 		72.5
(-2.7) 		69
(-3) 		89.3
(-1.4) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 85.4
(-3)
P 		162.3
(3)
P 		104.7
(-1.5)
P 		104.3
(-1.5)
P 		99.9
(-1.9)
P 		116.7
(-0.6)
P 		77
B 156
(0.4)
P 		125.4
(-2.1)
P 		136.7
(-1.2)
P 		115.3
(-3)
P 		131.5
(-1.6)
P 		186.1
(3)
P 		71
C 115.1
(-1.4)
P 		132.4
(-0.5)
P 		124.5
(-0.9)
P 		106
(-1.8)
P 		82
(-3)
P 		204.1
(3)
P 		122
avr 118.8
(-1.7) 		140
(0.3) 		122
(-1.4) 		108.5
(-2.6) 		104.5
(-3) 		169
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179760_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13974
Sequence Type Exemplar sequence
Representative Public ID R11D1.10 NCBI
Target Description R11D1.10 /REP_DB=WormBase Gene ID /WP=CE23927 /TR=Q21938 /GB=CAA99905.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073780(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073780 NCBI Caenorhabditis elegans R11D1.10 (R11D1.10) mRNA, complete cds. 11/11 None
SNAP00000040858 ENSEMBL cdna:SNAP chromosome:CEL140:V:12732090:12734313:1 11/11 None
GENEFINDER00000040866 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12732090:12734313:1 11/11 None
R11D1.10 ENSEMBL cdna:known chromosome:CEL140:V:12732110:12734322:1 gene:R11D1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12732089-12734313(+) 90.84 100.0
Public Domain and Genome References
Gene Title
Ensembl R11D1.10
Entrez Gene 179740 Entrez gene
SwissProt Q21938 EMBL-EBI
WormBase CE37547 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99905 Hypothetical protein R11D1.10 [Caenorhabditis elegans] ref|NP_506181.2| R11D1.10 [Caenorhabditis elegans] 0.0
blast CAE63979 Hypothetical protein CBG08571 [Caenorhabditis briggsae] 1.0E-149
blast CAF92395 unnamed protein product [Tetraodon nigroviridis] 7.0E-9
Sequence
Target Sequence 
>C. ELEGANS:179760_AT
aaggaacctgcgatgaacgccaataatccatctgaattaatgcgagtagctgaagatcgt
gcaagaattgaaaaaaaagaagaggaaatggaacataaagactgggatgagcttgaagca
agacgtaggaaaatatttgaagatgaaaaagaaaaaaatagagaagatgatgcttcaata
cgagaatcaatggtttctgcaaacacagagtttagtgaagcaacgaaagaagaaatgaat
gagattaataatattcttcaagacgcagaacaacgtgtagctgaaaccaagaagcaagaa
gaacatgatgccgctgaactcagaactctcatgaaatctactcgtcagaagtctcttgac
gctattcaatggaatgataagatcacgaaagaaattggtggattttgggatcgaagaaac
gaaaaattatctgtagatgaagatgaagatgaagacgagaagtccttagacgaagagact
ttcaaaaagattcttcacgaagccgaaaattcagaagatctgcctcctcaaacttcggaa
tcaaacaaggcgtcaacaccgagcaactcgagctcaccgaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAACCTGCGATGAACGCCAATA 414 159 715 Antisense
TGAACGCCAATAATCCATCTGAATT 76 575 728 Antisense
GAACAACGTGTAGCTGAAACCAAGA 635 351 982 Antisense
GAAGAACATGATGCCGCTGAACTCA 208 339 1012 Antisense
CCGCTGAACTCAGAACTCTCATGAA 215 263 1025 Antisense
GAAATCTACTCGTCAGAAGTCTCTT 318 363 1047 Antisense
GAAGTCTCTTGACGCTATTCAATGG 132 337 1062 Antisense
TTCAGAAGATCTGCCTCCTCAAACT 572 687 1224 Antisense
CTGCCTCCTCAAACTTCGGAATCAA 158 237 1234 Antisense
AAACAAGGCGTCAACACCGAGCAAC 672 127 1257 Antisense
CGAGCAACTCGAGCTCACCGAAGAA 334 249 1274 Antisense
Sequence Source Affymetrix Proprietary Database