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[179759_at]

Description Y54E2A.7 /REP_DB=WormBase Gene ID /WP=CE20306 /TR=Q9XWI8 /GB=CAA21679.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 42      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 2.5
(-3)
A 		10.6
(-0.7)
A 		24
(3)
A 		2.7
(-2.9)
A 		22
B 18.8
(0.4)
A 		29.5
(3)
A 		22.2
(1.2)
A 		4.5
(-3)
A 		25
C 7.9
(-2.7)
A 		48
(3)
A 		5.9
(-3)
A 		33.4
(0.9)
A 		42
avr 9.7
(-3) 		29.4
(3) 		17.4
(-0.7) 		13.5
(-1.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 7.2
(-2.3)
A 		2.1
(-3)
A 		7.6
(-2.3)
A 		9
(-2.1)
A 		36.8
(1.5)
A 		48.1
(3)
A 		46
B 20
(2)
A 		18.5
(1.6)
A 		11.3
(-0.4)
A 		2.1
(-3)
A 		23.5
(3)
A 		16.2
(1)
A 		21
C 24.2
(1.9)
A 		8.6
(-2.3)
A 		6.9
(-2.8)
A 		13.1
(-1.1)
A 		28.2
(3)
A 		6.1
(-3)
A 		22
avr 17.1
(-0.5) 		9.7
(-2.6) 		8.6
(-2.9) 		8.1
(-3) 		29.5
(3) 		23.5
(1.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.9
(-2.5)
A 		2.3
(-1.1)
A 		6.3
(3)
A 		0.4
(-3)
A 		6
B 6
(1.8)
A 		7.3
(3)
A 		5.2
(1)
A 		1
(-3)
A 		6
C 2.6
(-2.7)
A 		13.8
(3)
A 		2
(-3)
A 		5.6
(-1.2)
A 		12
avr 3.2
(-2) 		7.8
(3) 		4.5
(-0.6) 		2.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-2.7)
A 		0.7
(-3)
A 		1.7
(-2.5)
A 		2.3
(-2.1)
A 		11.1
(2.7)
A 		11.7
(3)
A 		11
B 7
(1.3)
A 		6.2
(0.8)
A 		2.7
(-1.6)
A 		0.6
(-3)
A 		9.5
(3)
A 		6
(0.6)
A 		9
C 9
(2.9)
A 		2.6
(-2.3)
A 		1.8
(-3)
A 		2.6
(-2.3)
A 		9.1
(3)
A 		2
(-2.8)
A 		7
avr 5.8
(-0) 		3.2
(-2) 		2.1
(-2.8) 		1.8
(-3) 		9.9
(3) 		6.6
(0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3493
Sequence Type Exemplar sequence
Representative Public ID Y54E2A.7 NCBI
Target Description Y54E2A.7 /REP_DB=WormBase Gene ID /WP=CE20306 /TR=Q9XWI8 /GB=CAA21679.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064662 NCBI Caenorhabditis elegans Y54E2A.7 (Y54E2A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000025449 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14771853:14772851:-1 11/11 None
Y54E2A.7 ENSEMBL cdna:known chromosome:CEL140:II:14771853:14772879:-1 gene:Y54E2A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025431 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14771849-14772848(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E2A.7
Entrez Gene 175135 Entrez gene
SwissProt Q9XWI8 EMBL-EBI
WormBase CE20306 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21679 Hypothetical protein Y54E2A.7 [Caenorhabditis elegans] ref|NP_497063.1| Y54E2A.7 [Caenorhabditis elegans] 2.0E-95
blast CAE60614 Hypothetical protein CBG04255 [Caenorhabditis briggsae] 5.0E-9
blast CAE60610 Hypothetical protein CBG04251 [Caenorhabditis briggsae] 5.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497063.1 1 15-37
Y54E2A.7 1 15-37
GENEFINDER00000025449 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:179759_AT
tgttgctgcattcgcgttgagcgctactatgtgcagtaaaaagaagaacccaaaatcaac
tagcaagggcagcaagagcactactcgtggaagtaaagatgcggtggcacgaggttccaa
ggatccgacggtcgcgaaagtcaagcaaaccgcggtcggtaacgacgtaaatccgaccga
gtcgaagccgacaaccaccactaccactattcccgatggggcagacactaagacggccga
tggtggagaggagaagaaggtgaagaagagcaagatgcacacggtcgatgagaagaagaa
ggtcacggaagatggggatcataagaagacggtcgacgatccacacgagaacacgctgcg
aatcgagatgatcgacgatgatcacaccaagaccaggaccacggatgcgacggtttgctt
cgacgatccgggtgtcaagccggcaggcggaaaaccaaatgcaggcgggaaaaagaagaa
cgcgacacagagcatggattgcccactgccaggcgagaaggacaagtcgaagaagtcgaa
aaagtcgctgaagtccaggcaaggacgacgagcgtccgactcaggatggaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGCTGCATTCGCGTTGAGCGCT 311 561 105 Antisense
AAGATGCGGTGGCACGAGGTTCCAA 411 155 200 Antisense
GTTCCAAGGATCCGACGGTCGCGAA 324 439 218 Antisense
GAAAGTCAAGCAAACCGCGGTCGGT 154 359 240 Antisense
ACTACCACTATTCCCGATGGGGCAG 637 101 304 Antisense
AAGAAGACGGTCGACGATCCACACG 558 151 427 Antisense
ATCCACACGAGAACACGCTGCGAAT 566 39 443 Antisense
TCGACGATGATCACACCAAGACCAG 679 601 476 Antisense
TTGCTTCGACGATCCGGGTGTCAAG 705 687 519 Antisense
CACAGAGCATGGATTGCCCACTGCC 492 195 590 Antisense
CGAGCGTCCGACTCAGGATGGAACT 693 249 673 Antisense
Sequence Source Affymetrix Proprietary Database