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[179758_at]

Description K02D7.5 /REP_DB=WormBase Gene ID /WP=CE17998 /TR=O45102 /GB=AAC02609.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 77      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_total > 78      4grp_total > 02      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1965
1 2 3 4 range
A 272.5
(-2.9)
P 		258.6
(-2.9)
P 		238.1
(-3)
P 		2187.9
(3)
P 		1950
B 231.3
(-3)
P 		277.5
(-2.8)
P 		222.8
(-3)
P 		2156.4
(3)
P 		1934
C 262.6
(-2.9)
P 		228.4
(-3)
P 		233.5
(-3)
P 		1981.5
(3)
P 		1753
avr 255.5
(-2.9) 		254.8
(-2.9) 		231.5
(-3) 		2108.6
(3) 		1877

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 178.8
(-2.7)
P 		206.1
(-2.2)
P 		159.2
(-3)
P 		252.1
(-1.4)
P 		267.3
(-1.1)
P 		500.3
(3)
P 		341
B 187.9
(-2.3)
P 		212.1
(-1.9)
P 		164.6
(-2.8)
M 		153.6
(-3)
P 		230.2
(-1.5)
P 		459.1
(3)
P 		306
C 236.6
(-1)
P 		172.6
(-2.6)
P 		154
(-3)
P 		165.9
(-2.7)
P 		269.2
(-0.2)
P 		404.6
(3)
P 		251
avr 201.1
(-2.2) 		196.9
(-2.2) 		159.3
(-3) 		190.5
(-2.4) 		255.6
(-1) 		454.7
(3) 		295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 99.2
(-2)
P 		56.1
(-3)
P 		62.2
(-2.9)
P 		320.3
(3)
P 		264
B 73.8
(-2.7)
P 		68.5
(-2.8)
P 		51.6
(-3)
P 		459.5
(3)
P 		408
C 86.9
(-2.5)
P 		65.7
(-3)
P 		81.4
(-2.6)
P 		334.1
(3)
P 		268
avr 86.6
(-2.5) 		63.4
(-3) 		65.1
(-3) 		371.3
(3) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 33
(-3)
P 		73.3
(-0.3)
P 		34.7
(-2.9)
P 		63.9
(-0.9)
P 		80.7
(0.2)
P 		121.8
(3)
P 		89
B 65.4
(-1.8)
P 		70.6
(-1.6)
P 		40
(-3)
M 		40.7
(-3)
P 		93.5
(-0.6)
P 		171.2
(3)
P 		131
C 87.7
(0.2)
P 		52.7
(-1.9)
P 		39.2
(-2.7)
P 		33.4
(-3)
P 		87.1
(0.2)
P 		135.4
(3)
P 		102
avr 62
(-1.6) 		65.5
(-1.4) 		38
(-3) 		46
(-2.5) 		87.1
(-0.2) 		142.8
(3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10406
Sequence Type Exemplar sequence
Representative Public ID K02D7.5 NCBI
Target Description K02D7.5 /REP_DB=WormBase Gene ID /WP=CE17998 /TR=O45102 /GB=AAC02609.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067500 NCBI Caenorhabditis elegans K02D7.5 (K02D7.5) mRNA, complete cds. 11/11 None
SNAP00000015227 ENSEMBL cdna:SNAP chromosome:CEL140:IV:307537:310931:1 11/11 None
GENEFINDER00000015239 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:307537:310931:1 11/11 None
K02D7.5 ENSEMBL cdna:known chromosome:CEL140:IV:307505:311214:1 gene:K02D7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:307536-310931(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02D7.5
Entrez Gene 186875 Entrez gene
SwissProt O45102 EMBL-EBI
WormBase CE17998 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254956_AT nodulin MtN3 family protein at
CANINE:1585331_AT similar to stromal cell protein cfa
CANINE_2:CFA.17963.1.S1_S_AT similar to stromal cell protein cfa
CANINE_2:CFA.7623.1.A1_AT similar to stromal cell protein cfa
CANINE_2:CFAAFFX.26104.1.S1_S_AT similar to stromal cell protein cfa
DROSOPHILA_2:1637508_AT saliva dm
DROSGENOME1:144065_AT saliva dm
HG-U133_PLUS_2:219125_S_AT recombination activating gene 1 activating protein 1 hs
HG-U133A:219125_S_AT recombination activating gene 1 activating protein 1 hs
HG-FOCUS:219125_S_AT recombination activating gene 1 activating protein 1 hs
HG-U133A_2:219125_S_AT recombination activating gene 1 activating protein 1 hs
HU35KSUBA:HUM_ALU_AT recombination activating gene 1 activating protein 1 hs
HU35KSUBB:HUM_ALU_AT recombination activating gene 1 activating protein 1 hs
HU35KSUBC:HUM_ALU_AT recombination activating gene 1 activating protein 1 hs
HU35KSUBD:HUM_ALU_AT recombination activating gene 1 activating protein 1 hs
HUGENEFL:HUM_ALU_AT recombination activating gene 1 activating protein 1 hs
HC-G110:HUM_ALU_AT recombination activating gene 1 activating protein 1 hs
HU35KSUBD:RC_AA449804_AT recombination activating gene 1 activating protein 1 hs
U133_X3P:G10047123_3P_S_AT recombination activating gene 1 activating protein 1 hs
U133_X3P:219125_3P_S_AT recombination activating gene 1 activating protein 1 hs
HG-U95E:78359_AT recombination activating gene 1 activating protein 1 hs
MOUSE430_2:1448948_AT recombination activating gene 1 activating protein 1 mm
MOE430A:1448948_AT recombination activating gene 1 activating protein 1 mm
MOUSE430A_2:1448948_AT recombination activating gene 1 activating protein 1 mm
MU11KSUBB:X96618_S_AT recombination activating gene 1 activating protein 1 mm
MG-U74AV2:102960_AT recombination activating gene 1 activating protein 1 mm
RG-U34C:AA686704_AT similar to recombination activating gene 1 gene activation (predicted) rn
RG-U34C:RC_AI138061_AT similar to recombination activating gene 1 gene activation (predicted) rn
RAE230A:1389705_AT similar to recombination activating gene 1 gene activation (predicted) rn
RAT230_2:1389705_AT similar to recombination activating gene 1 gene activation (predicted) rn
RG-U34B:RC_AA956813_AT Similar to recombination activating gene 1 gene activation (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02609 Hypothetical protein K02D7.5 [Caenorhabditis elegans] ref|NP_499901.1| K02D7.5 [Caenorhabditis elegans] 1.0E-150
blast AAC02609 Hypothetical protein K02D7.5 [Caenorhabditis elegans] ref|NP_499901.1| K02D7.5 [Caenorhabditis elegans] 1.0E-146
blast CAE67903 Hypothetical protein CBG13500 [Caenorhabditis briggsae] 1.0E-124
blast CAE67903 Hypothetical protein CBG13500 [Caenorhabditis briggsae] 1.0E-120
blast NP_504939 C54F6.4 [Caenorhabditis elegans] gb|AAG24009.1| Hypothetical protein C54F6.4 [Caenorhabditis elegans] 4.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 4.4E-36
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 7.1E-37
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 2.9E-15
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 9.9E-16
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 7.1E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499901.1 7 5-27,34-56,66-88,95-113,123-145,152-174,179-201
K02D7.5 7 5-27,34-56,66-88,95-113,123-145,152-174,179-201
SNAP00000015227 7 5-27,34-56,66-88,95-113,123-145,152-174,179-201
GENEFINDER00000015239 5 4-26,85-107,117-134,141-163,197-219
Sequence
Target Sequence 
>C. ELEGANS:179758_AT
aaccttcacatgtcagctgatccttgtgacgtcaactatcggaggaatggttttgtggat
cgcgttgaaaccgaatttggactatcttggcgtcatctgcatgacattcaatatcatgaa
ctttggagctccattggctggattgggagttgtgctgaaaaaccgtgaggtatcaaccct
tccacttccaatgtgcgtcgccaactttttggtctcttctcaatggtgcctctatggtaa
tttggtgtcggatatctacatcattatcccaaatggaatcggtatgttcttggcaattgt
ccagctcgccctcttcgtcgttcttccaatccgtgagaatgagaagagcccgttagaaaa
gctcgccagttggttcactggaagagattccaaggtcaaggatttggaaagaggagactg
tatcgtctcatccccaccgtcatccccacaaaaagtgccaaatgagacacgctccgacgt
tgaggacaagttcgataaattgatggctgaaacgtcatcaactattccatcagacagtcg
acgtggcagcatgggcagtccaccatcatacaagagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCTTCACATGTCAGCTGATCCTT 498 147 291 Antisense
GCTGATCCTTGTGACGTCAACTATC 669 291 306 Antisense
GGAATGGTTTTGTGGATCGCGTTGA 156 531 334 Antisense
ACTTCCAATGTGCGTCGCCAACTTT 489 103 474 Antisense
TCTCTTCTCAATGGTGCCTCTATGG 388 613 503 Antisense
TGTTCTTGGCAATTGTCCAGCTCGC 37 563 575 Antisense
AGAAAAGCTCGCCAGTTGGTTCACT 48 73 645 Antisense
GAGGAGACTGTATCGTCTCATCCCC 126 405 701 Antisense
AAATGAGACACGCTCCGACGTTGAG 284 119 750 Antisense
AGACAGTCGACGTGGCAGCATGGGC 698 71 822 Antisense
GGCAGTCCACCATCATACAAGAGCC 17 537 844 Antisense
Sequence Source Affymetrix Proprietary Database