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[179756_at]

Description F59H6.1 /REP_DB=WormBase Gene ID /WP=CE20907 /TR=Q9N5P6 /GB=AAF39861.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 02      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 1.9
(-3)
A 		6
(-2.7)
A 		23.5
(-1.3)
A 		77.4
(3)
A 		76
B 2.1
(-2.7)
A 		7.8
(3)
A 		1.8
(-3)
A 		2.4
(-2.4)
A 		6
C 19.8
(3)
A 		14.6
(1.3)
A 		1.1
(-3)
A 		11.4
(0.3)
A 		19
avr 7.9
(-3) 		9.5
(-2.6) 		8.8
(-2.8) 		30.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 49.7
(0.6)
A 		3.1
(-2.9)
A 		21.3
(-1.5)
A 		1.6
(-3)
A 		35.7
(-0.5)
A 		82.8
(3)
P 		81
B 1.5
(-3)
A 		2.1
(-3)
A 		4.3
(-2.8)
A 		49.4
(1)
A 		68
(2.5)
P 		74.2
(3)
P 		73
C 1.3
(-3)
A 		4.2
(-2.8)
A 		4.5
(-2.8)
A 		21.6
(-1.6)
A 		59.4
(1)
A 		89.2
(3)
P 		88
avr 17.5
(-1.9) 		3.1
(-3) 		10
(-2.5) 		24.2
(-1.4) 		54.4
(0.9) 		82.1
(3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.7
(-3)
A 		1.3
(-2.7)
A 		6.2
(0.1)
A 		11.3
(3)
A 		11
B 0.7
(-1.8)
A 		1.9
(3)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		2
C 6.6
(3)
A 		4.2
(0.7)
A 		0.4
(-3)
A 		1.9
(-1.5)
A 		6
avr 2.7
(-2) 		2.5
(-2.5) 		2.3
(-3) 		4.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 9.2
(-0.3)
A 		1.1
(-2.8)
A 		4.6
(-1.7)
A 		0.4
(-3)
A 		10.8
(0.2)
A 		20.2
(3)
P 		20
B 0.5
(-3)
A 		0.7
(-3)
A 		1
(-2.9)
A 		13.1
(-0.2)
A 		27.6
(3)
P 		27.7
(3)
P 		27
C 0.5
(-3)
A 		1.3
(-2.8)
A 		1.1
(-2.9)
A 		4.4
(-2.2)
A 		19.2
(0.8)
A 		29.9
(3)
P 		29
avr 3.4
(-2.4) 		1
(-3) 		2.2
(-2.7) 		6
(-1.8) 		19.2
(1.4) 		25.9
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5444
Sequence Type Exemplar sequence
Representative Public ID F59H6.1 NCBI
Target Description F59H6.1 /REP_DB=WormBase Gene ID /WP=CE20907 /TR=Q9N5P6 /GB=AAF39861.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061759(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061759 NCBI Caenorhabditis elegans F59H6.1 (F59H6.1) mRNA, complete cds. 10/11 None
GENEFINDER00000002436 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2035788:2039387:-1 10/11 None
F59H6.1 ENSEMBL cdna:known chromosome:CEL140:II:2035788:2039318:-1 gene:F59H6.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002434 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2035786-2039317(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-19
Ensembl F59H6.1
Entrez Gene 186640 Entrez gene
WormBase CE39103 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494160 F59H6.1 [Caenorhabditis elegans] 0.0
blast AAF39861 Hypothetical protein F59H6.1 [Caenorhabditis elegans] 0.0
blast AAF39861 Hypothetical protein F59H6.1 [Caenorhabditis elegans] 1.0E-135
blast NP_494160 F59H6.1 [Caenorhabditis elegans] 1.0E-121
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 4.0E-57
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 2.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.0E-13
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.2E-11
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-16
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.6E-6
Pfam IPR002083 EMBL-EBI MATH 7.7E-9
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.3E-5
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.0E-5
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.6E-6
Sequence
Target Sequence 
>C. ELEGANS:179756_AT
gaggtgctaactactcaatctgcatattttatggatcttctcaaagatcctgggatttcg
aaagtgaagctagatggcgacgatcttacagaatttcagaatcttctggaggttctgcac
ggaatgcctgccattgatgaccacaccgcccacgcaattctctacctggctcacaagctt
gagatgaagcttatagtccaaaaatgtgtggattttttgctccaaatctccgagagcacg
atccacgcggtcattcacttggcttgcaggcttcaaattcatcgtctacaccaaaaatgc
gcgaattttttgagcgaaaaatcggaaaatttcaacgatgagcttacgaactaccaactg
gagaaccttgtgaataattgcatcgaaaaaatcgactcaatcgataatatcaaagcgaaa
ttggctgctggctggaaggattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTGCTAACTACTCAATCTGCAT 211 403 445 Antisense
GATGGCGACGATCTTACAGAATTTC 249 405 517 Antisense
TGGAGGTTCTGCACGGAATGCCTGC 84 549 551 Antisense
ACGGAATGCCTGCCATTGATGACCA 2 97 563 Antisense
TCTCTACCTGGCTCACAAGCTTGAG 396 611 603 Antisense
CAAATCTCCGAGAGCACGATCCACG 8 193 667 Antisense
TCATTCACTTGGCTTGCAGGCTTCA 75 617 695 Antisense
GCAGGCTTCAAATTCATCGTCTACA 440 311 710 Antisense
CGTCTACACCAAAAATGCGCGAATT 25 245 727 Antisense
ATGAGCTTACGAACTACCAACTGGA 642 43 782 Antisense
AATTGGCTGCTGGCTGGAAGGATTC 386 177 863 Antisense
Sequence Source Affymetrix Proprietary Database