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[179755_at]

Description C46A5.2 /REP_DB=WormBase Gene ID /WP=CE08752 /TR=Q18651 /GB=AAB03149.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 6.5
(-3)
A 		20.8
(1.3)
A 		12.6
(-1.2)
A 		26.3
(3)
A 		20
B 40.5
(3)
A 		31.1
(1.5)
A 		8.3
(-2.2)
A 		3.4
(-3)
A 		37
C 31.9
(0.8)
A 		47
(3)
A 		7.7
(-2.6)
A 		5
(-3)
A 		42
avr 26.3
(1.3) 		33
(3) 		9.5
(-3) 		11.6
(-2.5) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 33.5
(2.2)
A 		3.7
(-3)
A 		38.1
(3)
A 		12.3
(-1.5)
A 		28.1
(1.3)
A 		7.3
(-2.4)
A 		34
B 7.2
(-2.7)
A 		6.6
(-2.9)
A 		17.6
(-0.4)
A 		6
(-3)
A 		23.8
(1)
A 		32.4
(3)
A 		26
C 19.3
(-1.3)
A 		29.8
(0.1)
A 		5.7
(-3)
A 		52.6
(3)
A 		34.7
(0.7)
A 		17.3
(-1.5)
A 		47
avr 20
(-0.4) 		13.4
(-3) 		20.5
(-0.3) 		23.6
(0.9) 		28.9
(3) 		19
(-0.8) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.4
(-3)
A 		4.5
(3)
A 		3.3
(-0.4)
A 		3.9
(1.3)
A 		2
B 12.9
(3)
A 		7.7
(0.4)
A 		1.9
(-2.4)
A 		0.7
(-3)
A 		12
C 10.6
(1.6)
A 		13.5
(3)
A 		2.7
(-2.1)
A 		0.8
(-3)
A 		13
avr 8.6
(3) 		8.6
(3) 		2.6
(-2.3) 		1.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.2
(1.1)
A 		1.3
(-3)
A 		8.3
(2.8)
A 		3.1
(-1.5)
A 		8.5
(3)
A 		1.8
(-2.6)
A 		7
B 2.5
(-2.5)
A 		2.2
(-2.7)
A 		4.3
(-1.5)
A 		1.6
(-3)
A 		9.7
(1.6)
A 		12.1
(3)
A 		11
C 7.1
(0.5)
A 		9.1
(1.7)
A 		1.4
(-3)
A 		10.6
(2.6)
A 		11.2
(3)
A 		5.8
(-0.3)
A 		10
avr 5.3
(-1.8) 		4.2
(-3) 		4.7
(-2.5) 		5.1
(-2) 		9.8
(3) 		6.6
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8854
Sequence Type Exemplar sequence
Representative Public ID C46A5.2 NCBI
Target Description C46A5.2 /REP_DB=WormBase Gene ID /WP=CE08752 /TR=Q18651 /GB=AAB03149.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068875 NCBI Caenorhabditis elegans C46A5.2 (C46A5.2) mRNA, complete cds. 11/11 None
SNAP00000025532 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7760151:7762839:1 11/11 None
GENEFINDER00000025542 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7761028:7762747:1 11/11 None
C46A5.2 ENSEMBL cdna:known chromosome:CEL140:IV:7760449:7762416:1 gene:C46A5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7760454-7762422(+) 91.28 100.0
Public Domain and Genome References
Gene Title
Ensembl C46A5.2
Entrez Gene 183498 Entrez gene
SwissProt Q18651 EMBL-EBI
WormBase CE36585 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5272 sodium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03149 Hypothetical protein C46A5.2 [Caenorhabditis elegans] ref|NP_501276.2| C46A5.2 [Caenorhabditis elegans] 0.0
blast CAE70875 Hypothetical protein CBG17665 [Caenorhabditis briggsae] 0.0
blast CAE70875 Hypothetical protein CBG17665 [Caenorhabditis briggsae] 1.0E-153
blast CAE70875 Hypothetical protein CBG17665 [Caenorhabditis briggsae] 1.0E-138
blast CAE69788 Hypothetical protein CBG16079 [Caenorhabditis briggsae] 1.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 6.1E-8
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 6.1E-8
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 6.1E-8
Sequence
Target Sequence 
>C. ELEGANS:179755_AT
gttttgccgcaactagttctttacaatggtgattcgaatgttgaaataggaatctatcca
agatactatttgaacagcaatgattggaaccgcgttcgtttttatcagaaatcaatgata
ctacttcccaagagtgatggatgttcaacagatcctatatatcagggaaaatttacatgt
tttgtgtacaaatggctaatgcaattgattgaacaatacaattgcacagttccatattac
aagtatacgttatcttatctgaaagatgtaccaatctgtgaacctgacgtaattgttaat
aacttcgaaaacatcagtttaactccatcaacaataggttataaatgcacttccgcgtgc
tcccgaatcgagaacactgtaacattggcgacgagcattgacaccgatccggacccatcg
tacatgtttcgaatagaagccagtttcacttatttggagtatgagcaatataaggagata
cgaactacaagtacagctggttttatttctgaacttggtggacaagctgggttatttgtt
ggaagttctgtgatgagctttgtgcaacttttcaattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGCCGCAACTAGTTCTTTACA 220 449 1084 Antisense
TGGAACCGCGTTCGTTTTTATCAGA 541 547 1168 Antisense
AATCAATGATACTACTTCCCAAGAG 600 171 1193 Antisense
TACAATTGCACAGTTCCATATTACA 87 643 1300 Antisense
GATGTACCAATCTGTGAACCTGACG 2 411 1348 Antisense
TTATAAATGCACTTCCGCGTGCTCC 438 679 1422 Antisense
CGTGCTCCCGAATCGAGAACACTGT 650 245 1439 Antisense
TTGGCGACGAGCATTGACACCGATC 329 707 1468 Antisense
TCCGGACCCATCGTACATGTTTCGA 309 593 1491 Antisense
GAAGCCAGTTTCACTTATTTGGAGT 144 345 1519 Antisense
GAGCTTTGTGCAACTTTTCAATTCG 426 387 1638 Antisense
Sequence Source Affymetrix Proprietary Database