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[179754_at]

Description T04G9.6 /REP_DB=WormBase Gene ID /WP=CE04887 /TR=Q22172 /GB=AAA82462.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 44      4grp_high_8_8 > 46      6grp_total > 36      4grp_total > 35      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 72.7
(-1.5)
P 		60.1
(-3)
A 		102.2
(2.1)
P 		110
(3)
P 		50
B 77.7
(0.7)
P 		89.7
(3)
A 		68.8
(-1)
P 		58.3
(-3)
P 		31
C 68.9
(1.1)
P 		85.6
(3)
P 		32.3
(-3)
A 		62.4
(0.4)
P 		53
avr 73.1
(-0) 		78.5
(3) 		67.8
(-3) 		76.9
(2.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 56
(-2.3)
P 		50.6
(-3)
M 		97.9
(3)
P 		74
(-0)
P 		59.2
(-1.9)
P 		62.8
(-1.5)
P 		47
B 71.2
(2.1)
P 		73.9
(2.6)
P 		40.7
(-2.8)
P 		39.4
(-3)
A 		45.5
(-2)
P 		76.6
(3)
P 		37
C 57.2
(0.1)
M 		79.6
(3)
P 		34
(-3)
A 		62.2
(0.7)
P 		52.6
(-0.6)
P 		36.9
(-2.6)
A 		46
avr 61.5
(0.5) 		68
(3) 		57.5
(-1) 		58.5
(-0.7) 		52.4
(-3) 		58.8
(-0.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 26.5
(2.9)
P 		13
(-3)
A 		26.7
(3)
P 		16.1
(-1.6)
P 		14
B 24.8
(3)
P 		22.2
(1.7)
A 		15.9
(-1.3)
P 		12.4
(-3)
P 		12
C 22.8
(2.2)
P 		24.6
(3)
P 		11.3
(-2.7)
A 		10.5
(-3)
P 		14
avr 24.7
(3) 		19.9
(0.5) 		18
(-0.4) 		13
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.3
(-3)
P 		18
(1.2)
M 		21.3
(3)
P 		18.8
(1.6)
P 		17.9
(1.1)
P 		15.3
(-0.3)
P 		11
B 24.8
(1.8)
P 		24.6
(1.7)
P 		9.9
(-3)
P 		10.4
(-2.8)
A 		18.5
(-0.2)
P 		28.6
(3)
P 		19
C 21.2
(1.8)
M 		24.3
(3)
P 		8.7
(-3)
A 		12.5
(-1.5)
P 		17
(0.2)
P 		12.4
(-1.6)
A 		16
avr 18.8
(0.7) 		22.3
(3) 		13.3
(-3) 		13.9
(-2.6) 		17.8
(0) 		18.8
(0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18564
Sequence Type Exemplar sequence
Representative Public ID T04G9.6 NCBI
Target Description T04G9.6 /REP_DB=WormBase Gene ID /WP=CE04887 /TR=Q22172 /GB=AAA82462.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075754 NCBI Caenorhabditis elegans T04G9.6 (T04G9.6) mRNA, complete cds. 11/11 None
T04G9.6 ENSEMBL cdna:known chromosome:CEL140:X:780527:785623:-1 gene:T04G9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034735 3/11 Cross Hyb Matching Probes None
GENEFINDER00000034740 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:780526-785623(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04G9.6
Entrez Gene 188069 Entrez gene
SwissProt Q22172 EMBL-EBI
WormBase CE04887 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508155 T04G9.6 [Caenorhabditis elegans] gb|AAA82462.1| Hypothetical protein T04G9.6 [Caenorhabditis elegans] 0.0
blast CAE63621 Hypothetical protein CBG08115 [Caenorhabditis briggsae] 1.0E-58
Sequence
Target Sequence 
>C. ELEGANS:179754_AT
ggtgacggtgcaaatggagccagagataattaccataatcgatattttggaaaagctggg
tatcatctaactagaaatgctattgttaatcaggcagatggcagggacactatgccatct
gtcgaaaaaagagcattgcaaaacgaacgaagacgttggacggaaatcaaccaaagaggg
ggaagagatgacaatgccattttagaagttcctgatacaaatggtatttacacaaactgt
tgggaaacggaatacgaacaacccttacccccacatacatgtgtgtcatggaaaactgca
aaggcctttgtttttaggagtgcacctcaaaattactactttgatctagtttctcgttgt
cacaaaattactaaagatctgtctaattccttgtttcctttttgcattcccaggtcatat
ctttgccaacataaaatgttcacacttaaatgttttttttctcttcaaacattttgtatt
aaacttacttatttgaacttaacaagaaaaaaaaattgcttacttattagcattctgtct
ccaaaaacatgtttttatgtcagagttctcttacaatcatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGACGGTGCAAATGGAGCCAGAG 53 501 1201 Antisense
ATCAGGCAGATGGCAGGGACACTAT 314 29 1289 Antisense
GACAATGCCATTTTAGAAGTTCCTG 415 359 1390 Antisense
CCCTTACCCCCACATACATGTGTGT 618 259 1462 Antisense
GGAGTGCACCTCAAAATTACTACTT 646 515 1517 Antisense
TTTGATCTAGTTTCTCGTTGTCACA 13 669 1540 Antisense
TCTAATTCCTTGTTTCCTTTTTGCA 577 613 1582 Antisense
TTCCTTTTTGCATTCCCAGGTCATA 661 695 1595 Antisense
ATTCCCAGGTCATATCTTTGCCAAC 322 9 1606 Antisense
TACTTATTAGCATTCTGTCTCCAAA 11 645 1721 Antisense
GTCAGAGTTCTCTTACAATCATTTG 29 467 1759 Antisense
Sequence Source Affymetrix Proprietary Database