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[179753_at]

Description F42C5.5 /REP_DB=WormBase Gene ID /WP=CE04558 /TR=Q20324 /GB=AAA81481.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 23.1
(-0.7)
A 		7
(-3)
A 		19.6
(-1.2)
A 		48.5
(3)
P 		42
B 23.3
(2.7)
A 		24.5
(3)
A 		1.4
(-3)
A 		22.3
(2.4)
A 		23
C 20.5
(2.9)
A 		12.7
(-3)
A 		20.6
(3)
A 		18.9
(1.7)
A 		8
avr 22.3
(0.2) 		14.7
(-2.7) 		13.9
(-3) 		29.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 3.2
(-3)
A 		28.8
(-0.4)
A 		13.9
(-1.9)
A 		3.2
(-3)
A 		20.4
(-1.2)
A 		61.9
(3)
P 		59
B 18.4
(-1.6)
A 		3
(-3)
A 		30.5
(-0.6)
A 		20.7
(-1.4)
A 		48
(1)
A 		71.3
(3)
P 		68
C 4.1
(-3)
A 		18.2
(-1.5)
A 		9.5
(-2.4)
A 		7.7
(-2.6)
A 		61.5
(3)
A 		28.1
(-0.5)
P 		57
avr 8.6
(-3) 		16.7
(-1.9) 		18
(-1.8) 		10.5
(-2.7) 		43.3
(1.6) 		53.8
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.4
(3)
A 		1.5
(-3)
A 		5.1
(0.1)
A 		7.1
(1.9)
P 		7
B 7.4
(3)
A 		6.1
(1.9)
A 		0.3
(-3)
A 		4.7
(0.7)
A 		7
C 6.8
(2.4)
A 		3.7
(-2.3)
A 		7.2
(3)
A 		3.2
(-3)
A 		4
avr 7.5
(3) 		3.8
(-3) 		4.2
(-2.4) 		5
(-1.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 0.6
(-3)
A 		10.2
(1)
A 		3
(-2)
A 		0.8
(-2.9)
A 		6.2
(-0.7)
A 		15.1
(3)
P 		15
B 6.4
(-1.7)
A 		1
(-3)
A 		7.4
(-1.5)
A 		5.5
(-1.9)
A 		19.5
(1.3)
A 		26.6
(3)
P 		26
C 1.5
(-3)
A 		5.6
(-1.7)
A 		2.4
(-2.7)
A 		1.5
(-3)
A 		19.9
(3)
A 		9.4
(-0.4)
P 		18
avr 2.8
(-2.9) 		5.6
(-1.8) 		4.3
(-2.3) 		2.6
(-3) 		15.2
(2.3) 		17
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9999
Sequence Type Exemplar sequence
Representative Public ID F42C5.5 NCBI
Target Description F42C5.5 /REP_DB=WormBase Gene ID /WP=CE04558 /TR=Q20324 /GB=AAA81481.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068762 NCBI Caenorhabditis elegans F42C5.5 (F42C5.5) mRNA, complete cds. 11/11 None
SNAP00000034678 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7292586:7294115:-1 11/11 None
GENEFINDER00000034686 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7292586:7294115:-1 11/11 None
F42C5.5 ENSEMBL cdna:known chromosome:CEL140:IV:7292586:7294115:-1 gene:F42C5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7292591-7294121(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42C5.5
Entrez Gene 185664 Entrez gene
SwissProt Q20324 EMBL-EBI
WormBase CE04558 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81481 Hypothetical protein F42C5.5 [Caenorhabditis elegans] ref|NP_501163.1| F42C5.5 [Caenorhabditis elegans] 0.0
blast CAE68929 Hypothetical protein CBG14908 [Caenorhabditis briggsae] 1.0E-132
blast ABA03116 Hypothetical protein M01A12.4 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.9E-28
Sequence
Target Sequence 
>C. ELEGANS:179753_AT
actgttgtttgtctggttttgccagaagaggctggaggttattttgtgccaaaagaagga
gaaactttcacgagctttcaaaagtatcagataaaaacgatcggaatttttgatgaaaaa
caaggcgtcactgtttatcaatgtgaattgaaatcgtataaagctccgaagaaactcaat
cgtcgaatggtttatatcatttgctgcgatacatctgttggatctattcgttctcctcgt
caacaaactgttatcatggaatacatgtgggcttttgaagagacaaatgcaattgaaaat
gaagtagcattagcagatgcaacaacaactgttttagttcatggaattgctggaactcgt
cgatgtgcttcatttgttgttgcagcagttatgtgcaaacagttgcttgaaactggacaa
ttctcggcaatggaaacatggtttgaaatgagaaagagaagagctcatacgtgcactcgt
aaacatgatttcttttcgtcagtctacactttttttgcattttgtgttcaatctagtgcc
gtcagcgagactaatgagaattatgccaagactatggagattgtgaaggatctccttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGTTGTTTGTCTGGTTTTGCCAG 392 97 355 Antisense
GAATGGTTTATATCATTTGCTGCGA 301 333 539 Antisense
TCATTTGCTGCGATACATCTGTTGG 488 619 551 Antisense
ATTAGCAGATGCAACAACAACTGTT 674 11 663 Antisense
GTTTTAGTTCATGGAATTGCTGGAA 373 449 685 Antisense
ATTTGTTGTTGCAGCAGTTATGTGC 161 19 726 Antisense
GAAACTGGACAATTCTCGGCAATGG 81 357 763 Antisense
GAGAAGAGCTCATACGTGCACTCGT 333 389 810 Antisense
GAGCTCATACGTGCACTCGTAAACA 710 385 815 Antisense
TTATGCCAAGACTATGGAGATTGTG 624 667 915 Antisense
GGAGATTGTGAAGGATCTCCTTGTC 416 517 930 Antisense
Sequence Source Affymetrix Proprietary Database