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[179752_at]

Description F17A9.1 /REP_DB=WormBase Gene ID /WP=CE09445 /TR=O16217 /GB=AAB65278.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 59      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 6.2
(-2.8)
A 		5.5
(-3)
A 		25.4
(3)
A 		11.8
(-1.1)
A 		20
B 41.6
(1.4)
A 		55.2
(3)
A 		36.1
(0.8)
A 		4
(-3)
A 		51
C 19.8
(-1)
A 		26.1
(0.5)
A 		36.3
(3)
A 		11.4
(-3)
A 		25
avr 22.5
(0.4) 		28.9
(2.1) 		32.6
(3) 		9.1
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 8.2
(-3)
A 		28.1
(-0.9)
A 		9.5
(-2.9)
A 		20.6
(-1.7)
A 		64.9
(3)
A 		14.7
(-2.3)
A 		57
B 8.4
(-3)
A 		28.7
(-0.4)
A 		20.6
(-1.4)
A 		18.8
(-1.7)
A 		41.9
(1.3)
A 		55.4
(3)
A 		47
C 40.4
(0.6)
A 		60.9
(2.8)
A 		7.1
(-3)
A 		31.7
(-0.3)
A 		62.7
(3)
A 		8.8
(-2.8)
A 		56
avr 19
(-2.1) 		39.2
(0.6) 		12.4
(-3) 		23.7
(-1.5) 		56.5
(3) 		26.3
(-1.1) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.3
(-1.8)
A 		1.2
(-3)
A 		6.6
(3)
A 		1.7
(-2.4)
A 		5
B 13.3
(2.9)
A 		13.6
(3)
A 		8.4
(0.6)
A 		0.8
(-3)
A 		13
C 6.5
(-0.4)
A 		7.5
(0.1)
A 		12.6
(3)
A 		1.9
(-3)
A 		11
avr 7.4
(1.6) 		7.4
(1.6) 		9.2
(3) 		1.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.5
(-3)
A 		10
(-0.2)
A 		2.1
(-2.8)
A 		5.2
(-1.8)
A 		19.6
(3)
A 		3.6
(-2.3)
A 		18
B 2.9
(-3)
A 		9.6
(-0.7)
A 		5
(-2.3)
A 		5
(-2.3)
A 		17
(1.8)
A 		20.7
(3)
A 		18
C 15
(1.3)
A 		18.6
(2.4)
A 		1.8
(-3)
A 		6.4
(-1.5)
A 		20.3
(3)
A 		2.9
(-2.6)
A 		19
avr 6.5
(-1.7) 		12.7
(0.6) 		3
(-3) 		5.5
(-2.1) 		19
(3) 		9.1
(-0.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179752_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11646
Sequence Type Exemplar sequence
Representative Public ID F17A9.1 NCBI
Target Description F17A9.1 /REP_DB=WormBase Gene ID /WP=CE09445 /TR=O16217 /GB=AAB65278.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072179
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000021123 ENSEMBL cdna:SNAP chromosome:CEL140:V:6119812:6120441:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072179 1/11 Cross Hyb Matching Probes None
SNAP00000021122 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021133 7/11 Cross Hyb Matching Probes None
F17A9.1 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6119114-6120441(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20944 Hypothetical protein Y102A5C.3 [Caenorhabditis elegans] ref|NP_507277.1| Y102A5C.3 [Caenorhabditis elegans] 3.0E-25
blast AAB93315 Hypothetical protein ZK1290.9 [Caenorhabditis elegans] ref|NP_495583.2| ZK1290.9 [Caenorhabditis elegans] sp|Q09336|YOF9_CAEEL Hypothetical protein ZK1290.9 in chromosome II 9.0E-18
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 7.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-27
Sequence
Target Sequence 
>C. ELEGANS:179752_AT
aaatgccaatcgacgtgatgcccgatattttgaaacacgtgagtggtggtgatagggata
acaactcgttgcagatgattcttaatgatgctgaggttttgtacagtccaagagatggtg
gatgcgatgtcacctttgcggaaatctgtccaatcttggcacaaattcaacctaccagcc
tgcactttgaagtgaaaaatggtacgattggtcacgaagacgttgtgaatcttaaacaat
ggaaaaaagccgacattttcaattcgtatacctacatgaccattccgattgagaattttc
tacattttaaccatatctccattagtttgacagaactcaccactgatgacgcgctgaaaa
tttgtaatatgctcgactcctcggaaactttttataaagcatcgatcactgtgagagact
tcaatttgatggaaattgcgagagtcttcgatccggaaaatgaaatcatcaacgaagaga
atggaaatgaagaactctactacacagccgcagatggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCCAATCGACGTGATGCCCGA 497 119 239 Antisense
GATGCGATGTCACCTTTGCGGAAAT 373 413 359 Antisense
GCGGAAATCTGTCCAATCTTGGCAC 16 295 376 Antisense
GGCACAAATTCAACCTACCAGCCTG 613 533 396 Antisense
CCTACCAGCCTGCACTTTGAAGTGA 5 269 409 Antisense
GACATTTTCAATTCGTATACCTACA 234 371 490 Antisense
GTATACCTACATGACCATTCCGATT 352 451 504 Antisense
TCTACATTTTAACCATATCTCCATT 639 613 537 Antisense
ACAGAACTCACCACTGATGACGCGC 25 107 568 Antisense
AATATGCTCGACTCCTCGGAAACTT 153 173 604 Antisense
TCTACTACACAGCCGCAGATGGCAC 149 613 734 Antisense
Sequence Source Affymetrix Proprietary Database