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[179751_at]

Description T08B6.4 /REP_DB=WormBase Gene ID /WP=CE17225 /TR=O44527 /GB=AAB94160.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 5.8
(-3)
A 		13.9
(-2.3)
A 		5.9
(-3)
A 		74.2
(3)
A 		68
B 19.9
(2.6)
A 		4.4
(-2.6)
A 		21
(3)
A 		3.3
(-3)
A 		18
C 8.7
(-2)
A 		7.6
(-3)
A 		14.3
(3)
A 		9.7
(-1.1)
A 		7
avr 11.5
(-2.2) 		8.6
(-3) 		13.7
(-1.5) 		29.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 6.2
(-3)
A 		5.6
(-3)
A 		2.9
(-3)
A 		4.9
(-3)
A 		107.6
(-1.7)
P 		478.7
(3)
P 		476
B 3.9
(-3)
A 		2.6
(-3)
A 		4.9
(-3)
A 		3.1
(-3)
A 		114.8
(-1.3)
P 		396.1
(3)
P 		394
C 3.9
(-3)
A 		10.5
(-2.8)
A 		3
(-3)
A 		5
(-2.9)
A 		126
(0.6)
P 		209.2
(3)
P 		206
avr 4.7
(-3) 		6.2
(-3) 		3.6
(-3) 		4.3
(-3) 		116.1
(-1.1) 		361.3
(3) 		358
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.1
(-2.6)
A 		3
(-2)
A 		1.5
(-3)
A 		10.9
(3)
A 		9
B 6.3
(3)
A 		1.1
(-2.6)
A 		4.9
(1.5)
A 		0.7
(-3)
A 		6
C 2.9
(-0.7)
A 		2.2
(-1.9)
A 		5
(3)
A 		1.6
(-3)
A 		3
avr 3.8
(1.4) 		2.1
(-3) 		3.8
(1.4) 		4.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2
(-2.9)
A 		0.6
(-3)
A 		1.2
(-3)
A 		32.5
(-1.4)
P 		116.6
(3)
P 		116
B 1.4
(-3)
A 		0.9
(-3)
A 		1.2
(-3)
A 		0.8
(-3)
A 		46.6
(-1.1)
P 		147.7
(3)
P 		147
C 1.5
(-2.9)
A 		3.2
(-2.8)
A 		0.8
(-3)
A 		1
(-3)
A 		40.8
(0.5)
P 		70
(3)
P 		69
avr 1.3
(-3) 		2
(-2.9) 		0.9
(-3) 		1
(-3) 		40
(-0.9) 		111.4
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10803
Sequence Type Exemplar sequence
Representative Public ID T08B6.4 NCBI
Target Description T08B6.4 /REP_DB=WormBase Gene ID /WP=CE17225 /TR=O44527 /GB=AAB94160.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068268(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068268 NCBI Caenorhabditis elegans T08B6.4 (T08B6.4) mRNA, complete cds. 10/11 None
SNAP00000024946 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4906054:4908448:1 10/11 None
T08B6.4 ENSEMBL cdna:known chromosome:CEL140:IV:4905671:4908473:1 gene:T08B6.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4906059-4908544(+) 98.14 100.0
Public Domain and Genome References
Gene Title
Ensembl T08B6.4
Entrez Gene 188277 Entrez gene
SwissProt O44527 EMBL-EBI
WormBase CE37550 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500669 T08B6.4 [Caenorhabditis elegans] gb|AAB94160.2| Hypothetical protein T08B6.4 [Caenorhabditis elegans] 0.0
blast CAE63931 Hypothetical protein CBG08508 [Caenorhabditis briggsae] 1.0E-145
blast CAB03147 Hypothetical protein F58D2.2 [Caenorhabditis elegans] ref|NP_502536.1| F58D2.2 [Caenorhabditis elegans] 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500669.2 1 529-551
T08B6.4 1 529-551
SNAP00000024946 1 529-551
Sequence
Target Sequence 
>C. ELEGANS:179751_AT
ggcacctcaaaacgaagaacctccaactaccaccacaccaagaaccgctgagaattttgt
tccgacaagtacgatgaaatcactggagctcaatcctcttacggtcatcatcgatgcaaa
tgataatggtccgggcagctcgaagagtgatacggttaagtcggagcgagtgtttgtgaa
aggaaaatggtggtggtgggccatatatctcggctttgtcattggaactttgatcacgtt
ggctgttggtggaggactgttttatgtgctcagacggaccgttttcggcatttggttagt
ttatgatcttgaaattttaattttggaaggcaggcgtaggtaccgcggaatgtacaagcg
atatggatgtgatccatctggcaccactggcggtatcactggtattggattcggaaatac
tgtgactggagatgtgacggtccaagaaacatctggaaatactacgggcggtggaacaac
tacgaataccactgtgtctgagacctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACCTCAAAACGAAGAACCTCCA 39 535 1395 Antisense
CACCACACCAAGAACCGCTGAGAAT 168 203 1425 Antisense
TCAATCCTCTTACGGTCATCATCGA 451 633 1484 Antisense
TAATGGTCCGGGCAGCTCGAAGAGT 335 633 1518 Antisense
GTGGTGGTGGGCCATATATCTCGGC 275 489 1584 Antisense
ATCTCGGCTTTGTCATTGGAACTTT 359 33 1601 Antisense
GGAACTTTGATCACGTTGGCTGTTG 242 529 1618 Antisense
GTGCTCAGACGGACCGTTTTCGGCA 625 477 1660 Antisense
GAAGGCAGGCGTAGGTACCGCGGAA 206 333 1720 Antisense
GCACCACTGGCGGTATCACTGGTAT 331 315 1775 Antisense
GAATACCACTGTGTCTGAGACCTCG 344 325 1878 Antisense
Sequence Source Affymetrix Proprietary Database