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[179750_at]

Description D1037.1 /REP_DB=WormBase Gene ID /WP=CE20620 /TR=Q9TYS1 /GB=AAK21366.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      4grp_high_8_8 > 01      6grp_total > 69      4grp_total > 06      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 144.7
(-0.1)
P 		53.1
(-3)
A 		125.5
(-0.7)
M 		242.2
(3)
P 		189
B 237.5
(3)
P 		121.1
(-1.6)
P 		87.2
(-3)
A 		187.1
(1)
P 		150
C 175.9
(1.3)
P 		42.7
(-3)
A 		166.2
(1)
P 		228.5
(3)
P 		186
avr 186
(1.6) 		72.3
(-3) 		126.3
(-0.8) 		219.3
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 215.3
(1.4)
M 		186.9
(0.2)
P 		114.3
(-3)
P 		145.2
(-1.7)
P 		137
(-2)
P 		251.7
(3)
P 		137
B 138.9
(-1.2)
P 		177.6
(1.4)
P 		144.6
(-0.8)
P 		111.4
(-3)
P 		175.1
(1.2)
P 		202.2
(3)
P 		91
C 173.2
(0)
P 		170.2
(-0.1)
A 		138.5
(-1.3)
P 		96.8
(-3)
A 		187.1
(0.6)
P 		247.1
(3)
P 		150
avr 175.8
(0) 		178.2
(0.1) 		132.5
(-2.2) 		117.8
(-3) 		166.4
(-0.5) 		233.7
(3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 52.7
(3)
P 		11.5
(-3)
A 		32.8
(0.1)
M 		35.5
(0.5)
P 		41
B 75.7
(3)
P 		29.9
(-2)
P 		20.2
(-3)
A 		39.9
(-0.9)
P 		56
C 58.2
(3)
P 		12.3
(-3)
A 		57.9
(3)
P 		38.5
(0.4)
P 		46
avr 62.2
(3) 		17.9
(-3) 		37
(-0.4) 		38
(-0.3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 39.7
(-0.9)
M 		66.5
(3)
P 		24.9
(-3)
P 		36.8
(-1.3)
P 		41.3
(-0.6)
P 		61.3
(2.3)
P 		42
B 48.3
(-0.5)
P 		59.1
(0.9)
P 		35.1
(-2.3)
P 		29.5
(-3)
P 		71.1
(2.4)
P 		75.4
(3)
P 		46
C 64.2
(1.2)
P 		51.9
(0.1)
A 		35.2
(-1.5)
P 		19.5
(-3)
A 		60.5
(0.9)
P 		82.7
(3)
P 		63
avr 50.7
(-0) 		59.2
(1.1) 		31.7
(-2.6) 		28.6
(-3) 		57.6
(0.9) 		73.1
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179750_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.232
Sequence Type Exemplar sequence
Representative Public ID D1037.1 NCBI
Target Description D1037.1 /REP_DB=WormBase Gene ID /WP=CE20620 /TR=Q9TYS1 /GB=AAK21366.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058799 NCBI Caenorhabditis elegans D1037.1 (D1037.1) mRNA, complete cds. 11/11 None
SNAP00000024409 ENSEMBL cdna:SNAP chromosome:CEL140:I:3684804:3690049:1 11/11 None
GENEFINDER00000024415 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3684804:3690049:1 11/11 None
D1037.1.2 ENSEMBL cdna:known chromosome:CEL140:I:3684804:3690107:1 gene:D1037.1 11/11 None
D1037.1.1 ENSEMBL cdna:known chromosome:CEL140:I:3684804:3690141:1 gene:D1037.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3684803-3690049(+) 98.22 100.0
Public Domain and Genome References
Gene Title
Ensembl D1037.1
Entrez Gene 171936 Entrez gene
SwissProt Q9TYS1 EMBL-EBI
WormBase CE20620 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624277_AT dm
DROSGENOME1:149570_AT dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3725 double-stranded RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21366 Hypothetical protein D1037.1 [Caenorhabditis elegans] ref|NP_491200.1| D1037.1 [Caenorhabditis elegans] 0.0
blast CAE66685 Hypothetical protein CBG12024 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 3.1E-19
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 4.5E-11
Sequence
Target Sequence 
>C. ELEGANS:179750_AT
gaacagatcagtctctgggcagcgctaaaaagtcttcctggagagtacaccggtacaact
ggcctaaggcttctgactgcagacgagctacagcctcaaaatccaaaatatcacgcatgg
gtgaaaaaggaccaattcagaaatgctgcaccagcgaccggcggaatcggaagattgatg
ctggaaaagatgggatggcgtcctggagagggtctgggaaaggatgcgactggaaatttg
gagccgctgatgcttgatgtgaagagtgatcgaaaaggattaatcgctgaggaggagatg
agcatcaagcagagaaataagataaatgcacagaataatgttccagttgatttatcgaac
aaaaatccaatctccctaataatggaactttgcgctaaacgtcgctggaatcccccgtca
ttcagttgtgaagaatccggtgctgatcacttgaagatgttcgtctggactatagtcatc
aatgatgtagaataccgtccaatgtgtggctcaaagcaaaagaaggaaggaaaagccgtc
gctgctcaggtggctcttcagtcgctaggcgtacttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAGATCAGTCTCTGGGCAGCGC 551 351 1765 Antisense
GTCTTCCTGGAGAGTACACCGGTAC 683 467 1796 Antisense
ACTGGCCTAAGGCTTCTGACTGCAG 185 97 1822 Antisense
TGACTGCAGACGAGCTACAGCCTCA 492 571 1838 Antisense
CACCAGCGACCGGCGGAATCGGAAG 165 201 1913 Antisense
ATGGCGTCCTGGAGAGGGTCTGGGA 256 53 1959 Antisense
GGAACTTTGCGCTAAACGTCGCTGG 412 529 2148 Antisense
ATCCCCCGTCATTCAGTTGTGAAGA 240 39 2174 Antisense
GAATACCGTCCAATGTGTGGCTCAA 179 327 2254 Antisense
AGGAAGGAAAAGCCGTCGCTGCTCA 206 55 2288 Antisense
TCTTCAGTCGCTAGGCGTACTTCCA 650 611 2319 Antisense
Sequence Source Affymetrix Proprietary Database