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[179749_at]

Description Y26G10.2 /REP_DB=WormBase Gene ID /WP=CE19057 /TR=Q9XTV0 /GB=CAB11545.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 26      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 8.4
(-3)
A 		10.8
(-2.7)
A 		8.7
(-3)
A 		61.2
(3)
P 		53
B 12.5
(-2.4)
A 		60.8
(3)
A 		43.5
(1.1)
A 		7.3
(-3)
A 		54
C 25.3
(-1.6)
A 		21.9
(-2.1)
A 		15.6
(-3)
A 		56.1
(3)
A 		41
avr 15.4
(-3) 		31.2
(0.6) 		22.6
(-1.3) 		41.5
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 8.8
(-1.9)
A 		33.8
(3)
A 		25.9
(1.5)
A 		3.2
(-3)
A 		15.2
(-0.6)
A 		7.9
(-2.1)
A 		31
B 25.6
(-3)
A 		27.3
(-2.7)
A 		34.9
(-1.4)
A 		60.4
(3)
A 		26
(-2.9)
M 		29.1
(-2.4)
A 		35
C 9.3
(-1.5)
A 		22.5
(1)
A 		32
(2.9)
A 		32.5
(3)
A 		24
(1.3)
A 		1.8
(-3)
A 		31
avr 14.6
(-2.5) 		27.9
(1.7) 		30.9
(2.7) 		32
(3) 		21.7
(-0.2) 		12.9
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.1
(-2.3)
A 		2.3
(-3)
A 		2.3
(-3)
A 		9
(3)
P 		7
B 4
(-1.9)
A 		15
(3)
A 		10.1
(0.8)
A 		1.6
(-3)
A 		13
C 8.4
(1.4)
A 		6.3
(-1.7)
A 		5.4
(-3)
A 		9.5
(3)
A 		4
avr 5.2
(-3) 		7.9
(3) 		5.9
(-1.4) 		6.7
(0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.6
(-2.6)
A 		12
(3)
A 		5.6
(-0.4)
A 		0.8
(-3)
A 		4.6
(-1)
A 		1.9
(-2.4)
A 		11
B 8.9
(-2.7)
A 		9.1
(-2.5)
A 		8.5
(-3)
A 		16
(3)
A 		10.6
(-1.3)
M 		10.8
(-1.2)
A 		8
C 3.4
(-0.8)
A 		6.9
(2)
A 		8.1
(3)
A 		6.5
(1.7)
A 		7.8
(2.8)
A 		0.6
(-3)
A 		8
avr 4.6
(-2.8) 		9.3
(3) 		7.4
(0.7) 		7.8
(1.2) 		7.7
(1) 		4.4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179749_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13191
Sequence Type Exemplar sequence
Representative Public ID Y26G10.2 NCBI
Target Description Y26G10.2 /REP_DB=WormBase Gene ID /WP=CE19057 /TR=Q9XTV0 /GB=CAB11545.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075076 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-32) (srh-32) mRNA, complete cds. 11/11 None
Y26G10.2 ENSEMBL cdna:known chromosome:CEL140:V:17703788:17705861:1 gene:Y26G10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032554 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17703787-17705861(+) 98.62 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-32
Ensembl Y26G10.2
Entrez Gene 189554 Entrez gene
SwissProt Q9XTV0 EMBL-EBI
WormBase CE19057 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB11545 Hypothetical protein Y26G10.2 [Caenorhabditis elegans] ref|NP_507477.1| Serpentine Receptor, class H family member (srh-32) [Caenorhabditis elegans] 1.0E-175
blast CAB63322 Hypothetical protein W06D12.7 [Caenorhabditis elegans] ref|NP_507479.1| Serpentine Receptor, class H family member (srh-31) [Caenorhabditis elegans] 1.0E-118
blast CAE58260 Hypothetical protein CBG01361 [Caenorhabditis briggsae] 7.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507477.1 7 20-42,55-77,97-119,140-162,207-229,250-272,282-304
Y26G10.2 7 20-42,55-77,97-119,140-162,207-229,250-272,282-304
Sequence
Target Sequence 
>C. ELEGANS:179749_AT
tacattttcgtatttctatttcccaatataatgttctatggttttcaaattcctgaccag
tcaagtataaaggagatgacaaaacagatctccccctactaccccgactgcattgacaat
ccaaacataattgtattcatctccccagacactgaaaaacagaagaaatccctcatattc
tacctaatttacctactttccctggcaatagcaagtattttatcggctcaatttgcctat
ttcctgctctcaaaacgaatgacaaatcagtctgaaaaaaccaggaaaatgcaccaaaaa
ttcaatcgtcgtaccctttttcaagtattaatcgatacttctttcacttcaattccattc
actatttccaatatggttacgctttttcggtggagagttcctgaactcacgtattttgtg
gatttcacctcgaaaagtggctcaacagcttgtatttttgtgcttttcctatattacgag
cctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATTTTCGTATTTCTATTTCCCA 699 643 448 Antisense
GGTTTTCAAATTCCTGACCAGTCAA 160 505 487 Antisense
AGATGACAAAACAGATCTCCCCCTA 669 67 521 Antisense
CATAATTGTATTCATCTCCCCAGAC 7 209 573 Antisense
GAAATCCCTCATATTCTACCTAATT 55 363 612 Antisense
TACCTACTTTCCCTGGCAATAGCAA 54 647 637 Antisense
TATCGGCTCAATTTGCCTATTTCCT 322 657 668 Antisense
ATTAATCGATACTTCTTTCACTTCA 60 13 774 Antisense
ACTTCAATTCCATTCACTATTTCCA 444 103 793 Antisense
ATGGTTACGCTTTTTCGGTGGAGAG 529 43 820 Antisense
GTGCTTTTCCTATATTACGAGCCTT 120 479 907 Antisense
Sequence Source Affymetrix Proprietary Database