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[179748_at]

Description F07E5.6 /REP_DB=WormBase Gene ID /WP=CE09218 /TR=P91224 /GB=AAB37905.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 47.5
(-2.6)
A 		44.1
(-3)
A 		80.6
(1.5)
A 		92.4
(3)
A 		48
B 67.6
(3)
A 		50.1
(-3)
A 		51.8
(-2.4)
A 		55.9
(-1)
A 		18
C 33.8
(-3)
A 		60.3
(0.9)
A 		66.6
(1.8)
A 		74.8
(3)
A 		41
avr 49.6
(-3) 		51.5
(-2.5) 		66.3
(1) 		74.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 106.3
(3)
A 		40.3
(-3)
A 		72.8
(-0)
A 		55.4
(-1.6)
A 		90.5
(1.6)
A 		52.8
(-1.9)
A 		66
B 76.4
(0.9)
A 		50.5
(-2.4)
A 		45.8
(-3)
A 		92.8
(3)
A 		57.8
(-1.5)
A 		56.3
(-1.7)
A 		47
C 61.6
(3)
A 		61.4
(3)
A 		8.5
(-3)
A 		47.6
(1.4)
A 		58.8
(2.7)
A 		57.3
(2.5)
A 		53
avr 81.4
(3) 		50.7
(-1.7) 		42.4
(-3) 		65.3
(0.5) 		69
(1.1) 		55.5
(-1) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 17.3
(1)
A 		9.6
(-3)
A 		21.1
(3)
A 		13.5
(-1)
A 		12
B 21.6
(3)
A 		12.4
(-2.7)
A 		12
(-2.9)
A 		11.9
(-3)
A 		10
C 11.2
(-3)
A 		17.3
(0.1)
A 		23.2
(3)
A 		12.6
(-2.3)
A 		12
avr 16.7
(0.9) 		13.1
(-2.6) 		18.8
(3) 		12.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 19.6
(-0.2)
A 		14.3
(-2.4)
A 		15.9
(-1.7)
A 		14.1
(-2.5)
A 		27.3
(3)
A 		12.8
(-3)
A 		15
B 26.6
(3)
A 		16.8
(-0.8)
A 		11.1
(-3)
A 		24.6
(2.2)
A 		23.5
(1.8)
A 		21
(0.8)
A 		16
C 22.8
(3)
A 		18.7
(1.8)
A 		2.2
(-3)
A 		9.6
(-0.8)
A 		19
(1.9)
A 		19.2
(2)
A 		21
avr 23
(2.9) 		16.6
(0) 		9.7
(-3) 		16.1
(-0.2) 		23.3
(3) 		17.7
(0.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5569
Sequence Type Exemplar sequence
Representative Public ID F07E5.6 NCBI
Target Description F07E5.6 /REP_DB=WormBase Gene ID /WP=CE09218 /TR=P91224 /GB=AAB37905.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061768 NCBI Caenorhabditis elegans F07E5.6 (F07E5.6) mRNA, complete cds. 11/11 None
SNAP00000023366 ENSEMBL cdna:SNAP chromosome:CEL140:II:2059824:2064090:-1 9/11 None
GENEFINDER00000023378 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2059786:2061853:-1 11/11 None
F07E5.6 ENSEMBL cdna:known chromosome:CEL140:II:2059786:2063845:-1 gene:F07E5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2059784-2063844(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07E5.6
Entrez Gene 184143 Entrez gene
SwissProt P91224 EMBL-EBI
WormBase CE09218 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37905 Hypothetical protein F07E5.6 [Caenorhabditis elegans] ref|NP_494169.1| F07E5.6 [Caenorhabditis elegans] 0.0
blast AAB37905 Hypothetical protein F07E5.6 [Caenorhabditis elegans] ref|NP_494169.1| F07E5.6 [Caenorhabditis elegans] 1.0E-113
blast AAB37905 Hypothetical protein F07E5.6 [Caenorhabditis elegans] ref|NP_494169.1| F07E5.6 [Caenorhabditis elegans] 2.0E-92
blast AAB37902 Hypothetical protein F07E5.2 [Caenorhabditis elegans] ref|NP_494167.1| F07E5.2 [Caenorhabditis elegans] 4.0E-80
blast AAB37902 Hypothetical protein F07E5.2 [Caenorhabditis elegans] ref|NP_494167.1| F07E5.2 [Caenorhabditis elegans] 3.0E-40
blast CAB60522 Hypothetical protein Y56A3A.10 [Caenorhabditis elegans] ref|NP_499540.1| Y56A3A.10 [Caenorhabditis elegans] 5.0E-21
blast AAC67477 Hypothetical protein F58E1.8 [Caenorhabditis elegans] ref|NP_494041.1| F58E1.8 [Caenorhabditis elegans] 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.7E-8
Sequence
Target Sequence 
>C. ELEGANS:179748_AT
gttcaacaagtcgctttggctcaaggaggagtttctggtgccactggtagctcaaagatt
aagctagtacgaggggtggccattgttaagacggaccaaggaacgaagaaaaaagaaaaa
aatacagacaaaggaaacaagaaaacagaaacaacaatcggtttcgatatcgtgtgcact
gtgacgccgcaggcaaaaagtctactacttgtgatgcgtgatgaatcgatgtcagtagga
atggcatttggcgcaaaactagcctatgcggcatacaagctcagatttcgaccggctccg
catcttacctccatccgatacagtgcgaaaatgactctgtctggtacatctggaatactc
ggaacggcggtgtgcctaggcgctgcctacgaggatttcgaggttccccaagacctcatt
atcaccggggcggtcgatgaagctggaactgtgcaaaagcaatcaccttcacttcctgct
ctggtttctccatgctcatcattatctccacgtgctcatgctcatttttccggctcacat
cgactcgtcatgattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAACAAGTCGCTTTGGCTCAAG 205 445 937 Antisense
TTTCTGGTGCCACTGGTAGCTCAAA 647 665 968 Antisense
CGATATCGTGTGCACTGTGACGCCG 525 247 1101 Antisense
TACAAGCTCAGATTTCGACCGGCTC 547 641 1210 Antisense
TTACCTCCATCCGATACAGTGCGAA 260 681 1241 Antisense
AATGACTCTGTCTGGTACATCTGGA 520 161 1266 Antisense
GGAATACTCGGAACGGCGGTGTGCC 198 533 1288 Antisense
GCGCTGCCTACGAGGATTTCGAGGT 167 285 1316 Antisense
TCCCCAAGACCTCATTATCACCGGG 228 597 1341 Antisense
TGCAAAAGCAATCACCTTCACTTCC 304 575 1388 Antisense
GCTCACATCGACTCGTCATGATTCT 350 301 1469 Antisense
Sequence Source Affymetrix Proprietary Database