[Home] | [Total List]

[179747_at]

Description C04E6.8 /REP_DB=WormBase Gene ID /WP=CE07913 /TR=O01463 /GB=AAK39141.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 15      4grp_high_8_8 > 21      6grp_total > 48      4grp_total > 10      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 732
1 2 3 4 range
A 162.3
(-2.8)
P 		253.1
(-2)
P 		145.7
(-3)
P 		789.3
(3)
P 		644
B 150.2
(-3)
P 		245.3
(-2.2)
P 		210.7
(-2.5)
P 		877.4
(3)
P 		727
C 187.7
(-3)
P 		323.5
(-1.7)
P 		192.9
(-2.9)
P 		809.5
(3)
P 		622
avr 166.7
(-3) 		274
(-2) 		183.1
(-2.9) 		825.4
(3) 		659

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 71.1
(-0.7)
P 		105.3
(1.6)
P 		59.6
(-1.5)
A 		37.6
(-3)
A 		71.4
(-0.7)
P 		125.8
(3)
P 		88
B 108.6
(0.4)
P 		89.4
(-0.7)
P 		55.8
(-2.6)
P 		48.2
(-3)
A 		65.1
(-2)
P 		154.8
(3)
P 		107
C 181.7
(3)
P 		123.6
(0.9)
P 		41.6
(-2)
P 		15
(-3)
A 		70.9
(-1)
P 		173
(2.7)
P 		167
avr 120.5
(1.4) 		106.1
(0.7) 		52.3
(-2) 		33.6
(-3) 		69.1
(-1.2) 		151.2
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 59.1
(-1.4)
P 		55
(-1.7)
P 		38.1
(-3)
P 		115.5
(3)
P 		77
B 47.9
(-3)
P 		60.6
(-2.5)
P 		48.8
(-3)
P 		187
(3)
P 		139
C 62.1
(-3)
P 		93
(-0.5)
P 		67.2
(-2.6)
P 		136.5
(3)
P 		74
avr 56.4
(-2.7) 		69.5
(-1.9) 		51.4
(-3) 		146.3
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 13.1
(-2.2)
P 		37.4
(3)
P 		13
(-2.2)
A 		9.5
(-3)
A 		21.5
(-0.4)
P 		30.6
(1.5)
P 		28
B 37.8
(0.3)
P 		29.8
(-0.7)
P 		13.5
(-2.9)
P 		12.8
(-3)
A 		26.5
(-1.2)
P 		57.7
(3)
P 		45
C 67.3
(3)
P 		37.7
(0.2)
P 		10.6
(-2.3)
P 		3
(-3)
A 		22.9
(-1.1)
P 		57.9
(2.1)
P 		64
avr 39.4
(1.6) 		35
(1) 		12.4
(-2.4) 		8.4
(-3) 		23.6
(-0.7) 		48.7
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179747_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11383
Sequence Type Exemplar sequence
Representative Public ID C04E6.8 NCBI
Target Description C04E6.8 /REP_DB=WormBase Gene ID /WP=CE07913 /TR=O01463 /GB=AAK39141.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072132 NCBI Caenorhabditis elegans C04E6.8 (C04E6.8) mRNA, complete cds. 11/11 None
SNAP00000001263 ENSEMBL cdna:SNAP chromosome:CEL140:V:5886209:5886398:-1 9/11 None
GENEFINDER00000001273 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5885804:5886389:-1 10/11 None
C04E6.8 ENSEMBL cdna:known chromosome:CEL140:V:5886026:5886398:-1 gene:C04E6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5886025-5886398(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E6.8
Entrez Gene 182203 Entrez gene
SwissProt O01463 EMBL-EBI
WormBase CE07913 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39141 Hypothetical protein C04E6.8 [Caenorhabditis elegans] ref|NP_504533.1| C04E6.8 [Caenorhabditis elegans] 2.0E-45
blast AAK39141 Hypothetical protein C04E6.8 [Caenorhabditis elegans] ref|NP_504533.1| C04E6.8 [Caenorhabditis elegans] 4.0E-41
blast CAE64553 Hypothetical protein CBG09301 [Caenorhabditis briggsae] 2.0E-32
blast CAE64553 Hypothetical protein CBG09301 [Caenorhabditis briggsae] 3.0E-32
blast AAK39141 Hypothetical protein C04E6.8 [Caenorhabditis elegans] ref|NP_504533.1| C04E6.8 [Caenorhabditis elegans] 1.0E-29
blast CAE68152 Hypothetical protein CBG13806 [Caenorhabditis briggsae] 1.0E-27
blast CAE68152 Hypothetical protein CBG13806 [Caenorhabditis briggsae] 2.0E-27
Sequence
Target Sequence 
>C. ELEGANS:179747_AT
cagaatggtgtctaacgcgcagctaacctgtgaggatccaacggagctcaaaaagatcct
tgctccatactttgctggattcaatcaaaccaccgaagttgccgatgcagaaggatcaat
gcgtttcatgcatccacagggagtaattgtgcaaaaggacaaggactcaacgtttggaaa
aaaggcgctcacagatctcttcaaaagatggtatgacttcactggaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAATGGTGTCTAACGCGCAGCTA 382 205 18 Antisense
AACGCGCAGCTAACCTGTGAGGATC 123 147 31 Antisense
TAACCTGTGAGGATCCAACGGAGCT 516 635 41 Antisense
GCTCAAAAAGATCCTTGCTCCATAC 17 303 63 Antisense
ATCCTTGCTCCATACTTTGCTGGAT 308 39 73 Antisense
GCTGGATTCAATCAAACCACCGAAG 272 291 91 Antisense
AAACCACCGAAGTTGCCGATGCAGA 516 125 104 Antisense
GCAGAAGGATCAATGCGTTTCATGC 582 313 124 Antisense
GCGTTTCATGCATCCACAGGGAGTA 692 289 138 Antisense
AAAAAGGCGCTCACAGATCTCTTCA 467 129 196 Antisense
AAGATGGTATGACTTCACTGGACCG 526 153 222 Antisense
Sequence Source Affymetrix Proprietary Database