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[179746_at]

Description F58H7.1 /REP_DB=WormBase Gene ID /WP=CE17930 /TR=O45090 /GB=AAC02592.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 03      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 204.8
(3)
P 		157
(0.9)
P 		81.4
(-2.4)
A 		68.9
(-3)
A 		136
B 208.9
(3)
P 		187.3
(2.1)
P 		113.4
(-1.1)
P 		68.7
(-3)
A 		140
C 199.2
(2.9)
P 		201.2
(3)
P 		81.2
(-3)
P 		124.4
(-0.8)
M 		120
avr 204.3
(3) 		181.8
(1.8) 		92
(-2.8) 		87.3
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 75.8
(-0.3)
P 		116.5
(3)
P 		88.6
(0.8)
P 		94.3
(1.2)
P 		111.8
(2.6)
P 		41.7
(-3)
A 		75
B 148.1
(3)
P 		129.6
(1.7)
P 		102.9
(-0.1)
P 		93.7
(-0.7)
P 		100
(-0.3)
P 		59.4
(-3)
P 		89
C 151.1
(3)
P 		90.7
(-0.6)
P 		67.9
(-2)
P 		108
(0.4)
A 		124
(1.4)
M 		51.4
(-3)
P 		100
avr 125
(3) 		112.3
(2) 		86.5
(-0.1) 		98.7
(0.9) 		111.9
(1.9) 		50.8
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 74.6
(3)
P 		34.1
(-0.8)
P 		21.3
(-2)
A 		10.1
(-3)
A 		65
B 66.6
(3)
P 		46.3
(0.7)
P 		26.3
(-1.7)
P 		14.6
(-3)
A 		52
C 65.9
(3)
P 		57.9
(1.9)
P 		28.3
(-2)
P 		21
(-3)
M 		45
avr 69
(3) 		46.1
(0.4) 		25.3
(-1.9) 		15.2
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 14
(-2.3)
P 		41.4
(3)
P 		19.3
(-1.3)
P 		23.9
(-0.4)
P 		33.8
(1.5)
P 		10.2
(-3)
A 		31
B 51.5
(3)
P 		43.2
(1.3)
P 		25
(-2.4)
P 		24.8
(-2.4)
P 		40.6
(0.8)
P 		22.1
(-3)
P 		29
C 56
(3)
P 		27.7
(-1.4)
P 		17.3
(-3)
P 		21.7
(-2.3)
A 		40.1
(0.5)
M 		17.2
(-3)
P 		39
avr 40.5
(3) 		37.4
(2.2) 		20.5
(-2) 		23.5
(-1.3) 		38.2
(2.4) 		16.5
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179746_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10860
Sequence Type Exemplar sequence
Representative Public ID F58H7.1 NCBI
Target Description F58H7.1 /REP_DB=WormBase Gene ID /WP=CE17930 /TR=O45090 /GB=AAC02592.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067615 NCBI Caenorhabditis elegans F58H7.1 (F58H7.1) mRNA, complete cds. 11/11 None
SNAP00000022283 ENSEMBL cdna:SNAP chromosome:CEL140:IV:922404:944062:-1 9/11 None
GENEFINDER00000022293 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:930492:935699:-1 11/11 None
F58H7.1 ENSEMBL cdna:known chromosome:CEL140:IV:930492:935699:-1 gene:F58H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:930497-935705(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58H7.1
Entrez Gene 186550 Entrez gene
SwissProt O45090 EMBL-EBI
WormBase CE17930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02592 Hypothetical protein F58H7.1 [Caenorhabditis elegans] ref|NP_500016.1| F58H7.1 [Caenorhabditis elegans] 0.0
blast AAC02593 Hypothetical protein F58H7.2 [Caenorhabditis elegans] ref|NP_500017.2| F58H7.2 [Caenorhabditis elegans] 0.0
blast CAE56260 Hypothetical protein CBG23903 [Caenorhabditis briggsae] 0.0
blast CAE68291 Hypothetical protein CBG13976 [Caenorhabditis briggsae] 0.0
blast AAC02592 Hypothetical protein F58H7.1 [Caenorhabditis elegans] ref|NP_500016.1| F58H7.1 [Caenorhabditis elegans] 1.0E-169
blast CAE68291 Hypothetical protein CBG13976 [Caenorhabditis briggsae] 8.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000120 EMBL-EBI Amidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:179746_AT
gaatggtcggtttgtagtcccggtggaggacgacgcaatttacgctgtgatctacgaata
tttgaagaaaaaaccattccattacacgtcaaaagcccactttttggtcgaatctccagc
gattaactctacaaaaccatcacatccactggtggatgtttccgtgattccaacgagttt
tgattataaacatgacaaaaaggaaagcgttttgaaaccagagccaccatttctactaat
ctcccggagcccaatgtatgctcacaacgatttattagtaaaaatagagccattttgcaa
cgaaaccgaagtgaaattccgtctcgaggaccgctatcctcagcatcaggttgacgcggt
gccatttctgtgcgccttgaatccgaaaatgtatttttgtgatagaaatgtcacgagttg
gcataaatgtgatagtactctgtgcttttcgacttctgtgctcatcgggttggactcttt
tgaggctgatacccgctgcctaaacgtgacccagcactttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGTCGGTTTGTAGTCCCGGTG 156 331 1215 Antisense
GACGACGCAATTTACGCTGTGATCT 516 379 1243 Antisense
TAACTCTACAAAACCATCACATCCA 517 639 1338 Antisense
GGATGTTTCCGTGATTCCAACGAGT 479 513 1368 Antisense
AGAGCCACCATTTCTACTAATCTCC 165 71 1434 Antisense
ATCTCCCGGAGCCCAATGTATGCTC 694 29 1453 Antisense
GCTATCCTCAGCATCAGGTTGACGC 576 303 1547 Antisense
ATTTCTGTGCGCCTTGAATCCGAAA 284 15 1578 Antisense
GTGATAGTACTCTGTGCTTTTCGAC 99 483 1643 Antisense
GGACTCTTTTGAGGCTGATACCCGC 383 525 1686 Antisense
TGCCTAAACGTGACCCAGCACTTTC 113 585 1711 Antisense
Sequence Source Affymetrix Proprietary Database