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[179745_at]

Description F29G9.2 /REP_DB=WormBase Gene ID /WP=CE27374 /TR=O16370 /GB=AAB65904.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 94      6grp_total > 98      4grp_total > 60      6grp_highest_sub > In      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 373.4
(3)
P 		309.9
(0.6)
P 		363
(2.6)
P 		213.2
(-3)
P 		160
B 302
(2.6)
P 		310.9
(3)
P 		254.4
(0.7)
P 		160.4
(-3)
P 		151
C 347.3
(1)
P 		435.5
(3)
P 		394.7
(2.1)
P 		177
(-3)
P 		259
avr 340.9
(2.6) 		352.1
(3) 		337.4
(2.5) 		183.5
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 593
1 2 3 4 5 6 range
A 344.5
(-2.1)
P 		423
(-0.9)
P 		284
(-3)
P 		335.4
(-2.2)
P 		688.4
(3)
P 		611.3
(1.9)
P 		404
B 369.8
(-2.1)
P 		473.4
(-0.9)
P 		285
(-3)
P 		496.8
(-0.7)
P 		713
(1.7)
P 		829.2
(3)
P 		544
C 328.8
(-2.8)
P 		449.1
(-1.5)
P 		308
(-3)
P 		455.7
(-1.4)
P 		676.1
(0.9)
P 		876.5
(3)
P 		569
avr 347.7
(-2.3) 		448.5
(-1) 		292.3
(-3) 		429.3
(-1.3) 		692.5
(2) 		772.3
(3) 		480
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 136
(3)
P 		67.3
(-0.9)
P 		94.9
(0.6)
P 		31.2
(-3)
P 		105
B 96.3
(3)
P 		76.8
(1.1)
P 		59
(-0.6)
P 		34.2
(-3)
P 		62
C 115
(1.7)
P 		125.2
(2.3)
P 		137.6
(3)
P 		29.8
(-3)
P 		108
avr 115.8
(3) 		89.8
(1.1) 		97.2
(1.7) 		31.7
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 63.5
(-2.9)
P 		150.4
(0.6)
P 		61.8
(-3)
P 		85.1
(-2)
P 		207.7
(3)
P 		148.8
(0.6)
P 		146
B 128.7
(-1.5)
P 		157.6
(-0.8)
P 		69.2
(-3)
P 		131.6
(-1.4)
P 		289.7
(2.5)
P 		309.2
(3)
P 		240
C 121.9
(-1.8)
P 		137
(-1.4)
P 		78.4
(-3)
P 		91.6
(-2.6)
P 		218.8
(0.9)
P 		293.4
(3)
P 		215
avr 104.7
(-1.8) 		148.3
(-0.4) 		69.8
(-3) 		102.8
(-1.9) 		238.7
(2.6) 		250.5
(3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11367
Sequence Type Exemplar sequence
Representative Public ID F29G9.2 NCBI
Target Description F29G9.2 /REP_DB=WormBase Gene ID /WP=CE27374 /TR=O16370 /GB=AAB65904.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072159(11), NM_182341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072159 NCBI Caenorhabditis elegans F29G9.2a (F29G9.2) mRNA, complete cds. 11/11 None
NM_182341 NCBI Caenorhabditis elegans F29G9.2b (F29G9.2) mRNA, complete cds. 11/11 None
SNAP00000000274 ENSEMBL cdna:SNAP chromosome:CEL140:V:6025510:6028727:1 11/11 None
GENEFINDER00000000286 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6026073:6028727:1 11/11 None
F29G9.2a ENSEMBL cdna:known chromosome:CEL140:V:6021588:6028931:1 gene:F29G9.2 11/11 None
F29G9.2b.1 ENSEMBL cdna:known chromosome:CEL140:V:6026066:6028727:1 gene:F29G9.2 11/11 None
F29G9.2b.2 ENSEMBL cdna:known chromosome:CEL140:V:6026068:6028727:1 gene:F29G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6026072-6028727(+) 100.0 100.0
Public Domain and Genome References
Ensembl F29G9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65904 Hypothetical protein F29G9.2a [Caenorhabditis elegans] ref|NP_504560.1| F29G9.2a [Caenorhabditis elegans] 0.0
blast AAN84798 Hypothetical protein F29G9.2b [Caenorhabditis elegans] ref|NP_872141.1| F29G9.2b [Caenorhabditis elegans] 0.0
blast CAE64526 Hypothetical protein CBG09264 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179745_AT
ttctggaactcttcatccaacgtgggctcagattgtgacgagaagacgatcattgaacgg
ggatggttaggcgaagaagtgatgagtaatagtgaagattgtcatttggaactgaaacca
gtgatgactacatcctcgacatcctcttctcatattttcggaaatgataaatgtccgatg
tttgattcgatgacaagtaacatgacatcttccggatgcacaacatatgcgagttctgga
actgatggggatagtgtttttgtgattggagatgaaattgatattggcaatctcgaagtt
cgtacactgtcgcgaattgacgaagaagctacatctgccagtgacactctcaaagaaagt
gctcgaatgcctccgaaaatcgctccgccaatttgttcctcattagtactgactaatttt
gataatatgtccgaagactgtgctccgagacttatgagaagtgcttctgaaacctgccgt
cccacaacaaccttgatctcttcaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGGAACTCTTCATCCAACGTGG 47 693 1018 Antisense
ATCCAACGTGGGCTCAGATTGTGAC 228 41 1032 Antisense
AGTGATGACTACATCCTCGACATCC 666 59 1137 Antisense
GTAACATGACATCTTCCGGATGCAC 645 461 1214 Antisense
GGATGCACAACATATGCGAGTTCTG 605 513 1231 Antisense
TCTCGAAGTTCGTACACTGTCGCGA 634 609 1308 Antisense
GAAGCTACATCTGCCAGTGACACTC 135 343 1342 Antisense
GCTCGAATGCCTCCGAAAATCGCTC 56 297 1378 Antisense
ATTTGTTCCTCATTAGTACTGACTA 28 19 1408 Antisense
ATGTCCGAAGACTGTGCTCCGAGAC 49 49 1444 Antisense
CACAACAACCTTGATCTCTTCAACG 362 195 1500 Antisense
Sequence Source Affymetrix Proprietary Database