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[179744_at]

Description Y68A4A.3 /REP_DB=WormBase Gene ID /WP=CE19255 /TR=Q9XXP8 /GB=CAA16421.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 27      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 25.1
(1.1)
A 		4.1
(-3)
A 		19.2
(-0)
A 		34.7
(3)
A 		31
B 6.3
(-3)
A 		67.9
(3)
A 		16.8
(-2)
A 		26.1
(-1.1)
A 		62
C 26.1
(0.1)
A 		10
(-2.3)
A 		5.5
(-3)
A 		45
(3)
A 		40
avr 19.2
(-1.5) 		27.3
(0.8) 		13.8
(-3) 		35.3
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 69.2
(3)
A 		5.6
(-2.9)
A 		4.3
(-3)
A 		12.8
(-2.2)
A 		6.7
(-2.8)
A 		25.3
(-1.1)
A 		65
B 9.2
(-1.1)
A 		28.2
(3)
A 		4.8
(-2.1)
A 		14.9
(0.1)
A 		22.1
(1.7)
A 		0.4
(-3)
A 		28
C 4.9
(-2.5)
A 		25
(3)
A 		6.2
(-2.2)
A 		14.7
(0.2)
A 		3.1
(-3)
A 		3.5
(-2.9)
A 		22
avr 27.8
(3) 		19.6
(0.8) 		5.1
(-3) 		14.1
(-0.6) 		10.6
(-1.5) 		9.7
(-1.8) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.1
(3)
A 		0.9
(-3)
A 		5
(0)
A 		5.1
(0.1)
A 		8
B 2
(-3)
A 		16.8
(3)
A 		3.9
(-2.2)
A 		5.6
(-1.5)
A 		15
C 8.6
(3)
A 		2.9
(-2.1)
A 		1.9
(-3)
A 		7.6
(2.1)
A 		7
avr 6.6
(2.5) 		6.9
(3) 		3.6
(-3) 		6.1
(1.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 12.8
(3)
A 		2
(-2.4)
A 		0.9
(-3)
A 		3.2
(-1.8)
A 		2
(-2.4)
A 		6.2
(-0.3)
A 		12
B 3.2
(-1)
A 		9.4
(3)
A 		1.2
(-2.3)
A 		3.9
(-0.6)
A 		9
(2.7)
A 		0.2
(-3)
A 		9
C 1.8
(-2.3)
A 		7.6
(3)
A 		1.6
(-2.5)
A 		3
(-1.2)
A 		1
(-3)
A 		1.2
(-2.8)
A 		7
avr 5.9
(2.5) 		6.3
(3) 		1.2
(-3) 		3.4
(-0.4) 		4
(0.3) 		2.5
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179744_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14159
Sequence Type Exemplar sequence
Representative Public ID Y68A4A.3 NCBI
Target Description Y68A4A.3 /REP_DB=WormBase Gene ID /WP=CE19255 /TR=Q9XXP8 /GB=CAA16421.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074952 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-199) (str-199) mRNA, complete cds. 11/11 A 
GENEFINDER00000011468 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17190203:17193076:-1 9/11 None
Y68A4A.3 ENSEMBL cdna:known chromosome:CEL140:V:17191764:17193076:-1 gene:Y68A4A.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17191763-17193076(-) 100.0 100.0
chrV:17459195-17460746(-) 93.04 93.04
Public Domain and Genome References
Gene Title
Gene Symbol str-199
Ensembl Y68A4A.3
Entrez Gene 190524 Entrez gene
SwissProt Q9XXP8 EMBL-EBI
WormBase CE19255 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16421 Hypothetical protein Y68A4A.3 [Caenorhabditis elegans] ref|NP_507353.1| Seven TM Receptor family member (str-199) [Caenorhabditis elegans] 0.0
blast CAA16421 Hypothetical protein Y68A4A.3 [Caenorhabditis elegans] ref|NP_507353.1| Seven TM Receptor family member (str-199) [Caenorhabditis elegans] 1.0E-162
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-152
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-147
blast CAB04642 Hypothetical protein R10E8.5 [Caenorhabditis elegans] ref|NP_507571.1| R10E8.5 [Caenorhabditis elegans] 2.0E-93
blast CAB04642 Hypothetical protein R10E8.5 [Caenorhabditis elegans] ref|NP_507571.1| R10E8.5 [Caenorhabditis elegans] 3.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.5E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507353.1 7 5-22,34-53,81-103,124-146,201-223,243-265,275-297
Y68A4A.3 7 5-22,34-53,81-103,124-146,201-223,243-265,275-297
GENEFINDER00000011468 7 5-22,34-53,81-103,124-146,184-206,226-248,258-280
Sequence
Target Sequence 
>C. ELEGANS:179744_AT
agctggcatgaaacacagtctcctttacattgttccagtctgttgtggtgttgtgtgggg
gttgatgtgtcggataaatttgaacgaatctccatcgaaatctgcttttttgaggttaaa
aaaaatgcaatttacaggaaatcaatcctcaattttttgttacagaatccatttccaaga
agcctttgatttgaaaattgaggaatgcgtttacgttgcttcttatttttggccagttga
taatcacggtgtttcctatcccgacactatatcatttgtgggtgttggtattatgtctct
gattcttcagctcggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGGCATGAAACACAGTCTCCTT 222 81 366 Antisense
ATGAAACACAGTCTCCTTTACATTG 316 45 373 Antisense
CAGTCTGTTGTGGTGTTGTGTGGGG 345 205 401 Antisense
GTTGTGTGGGGGTTGATGTGTCGGA 58 435 415 Antisense
ATTTGAACGAATCTCCATCGAAATC 550 17 443 Antisense
CCATCGAAATCTGCTTTTTTGAGGT 141 271 457 Antisense
TTTTTGTTACAGAATCCATTTCCAA 248 675 519 Antisense
GAATCCATTTCCAAGAAGCCTTTGA 238 329 530 Antisense
ATTTTTGGCCAGTTGATAATCACGG 579 13 590 Antisense
GCCAGTTGATAATCACGGTGTTTCC 218 281 597 Antisense
TGTCTCTGATTCTTCAGCTCGGAGA 90 559 659 Antisense
Sequence Source Affymetrix Proprietary Database