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[179743_at]

Description B0454.8 /REP_DB=WormBase Gene ID /WP=CE07758 /TR=O17169 /GB=AAB70945.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 57      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 4.4
(-3)
A 		19.2
(3)
A 		12.6
(0.3)
A 		9.3
(-1)
A 		15
B 6
(0)
A 		10.1
(3)
A 		9.8
(2.8)
A 		1.8
(-3)
A 		8
C 6
(-3)
A 		10.7
(-1.4)
A 		23.2
(3)
A 		6.3
(-2.9)
A 		17
avr 5.5
(-3) 		13.3
(1.8) 		15.2
(3) 		5.8
(-2.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.9
(0.2)
A 		4.9
(-1.5)
A 		2.3
(-3)
A 		2.5
(-2.9)
A 		12.9
(3)
A 		4.8
(-1.6)
A 		11
B 4.6
(0.3)
A 		4
(-0.3)
A 		7
(3)
A 		4.1
(-0.2)
A 		4
(-0.3)
A 		1.6
(-3)
A 		5
C 5.5
(-3)
A 		6.2
(1.2)
A 		6.5
(3)
A 		5.9
(-0.6)
A 		6.4
(2.4)
A 		6
(0)
A 		1
avr 6
(0.1) 		5
(-1.5) 		5.3
(-1.1) 		4.2
(-2.8) 		7.8
(3) 		4.1
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.6
(-2.6)
A 		4.2
(3)
A 		3.3
(1.1)
A 		1.4
(-3)
A 		3
B 1.9
(1.3)
A 		2.5
(3)
A 		2.3
(2.4)
A 		0.4
(-3)
A 		2
C 2
(-2.2)
A 		3.1
(-1.3)
A 		8.1
(3)
A 		1.1
(-3)
A 		7
avr 1.8
(-1.7) 		3.3
(0.8) 		4.6
(3) 		1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.5
(-1.2)
A 		1.7
(-0.9)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		3.9
(3)
A 		1.2
(-1.8)
A 		3
B 1.6
(2.5)
A 		1.3
(0.8)
A 		1.7
(3)
A 		1.1
(-0.3)
A 		1.6
(2.5)
A 		0.6
(-3)
A 		1
C 2
(2.3)
A 		1.9
(1.7)
A 		1.7
(0.3)
A 		1.2
(-3)
A 		2.1
(3)
A 		2
(2.3)
A 		1
avr 1.7
(-0.2) 		1.6
(-0.6) 		1.3
(-1.8) 		1
(-3) 		2.5
(3) 		1.3
(-1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5463
Sequence Type Exemplar sequence
Representative Public ID B0454.8 NCBI
Target Description B0454.8 /REP_DB=WormBase Gene ID /WP=CE07758 /TR=O17169 /GB=AAB70945.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062029 NCBI Caenorhabditis elegans B0454.8 (B0454.8) mRNA, complete cds. 11/11 None
SNAP00000034451 ENSEMBL cdna:SNAP chromosome:CEL140:II:3040978:3043401:-1 11/11 None
GENEFINDER00000034458 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3040978:3043401:-1 11/11 None
B0454.8 ENSEMBL cdna:known chromosome:CEL140:II:3040978:3044040:-1 gene:B0454.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3040976-3044039(-) 96.79 100.0
Public Domain and Genome References
Gene Title
Ensembl B0454.8
Entrez Gene 181994 Entrez gene
SwissProt O17169 EMBL-EBI
WormBase CE07758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70945 Hypothetical protein B0454.8 [Caenorhabditis elegans] ref|NP_494430.1| B0454.8 [Caenorhabditis elegans] 0.0
blast AAB37615 Hypothetical protein B0554.2 [Caenorhabditis elegans] ref|NP_503200.1| B0554.2 [Caenorhabditis elegans] 1.0E-135
blast AAB37613 Hypothetical protein B0554.4 [Caenorhabditis elegans] ref|NP_503198.1| B0554.4 [Caenorhabditis elegans] 7.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 1.3E-66
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.5E-64
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.4E-64
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.0E-63
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 6.9E-65
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 1.3E-66
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.5E-64
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.4E-64
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.0E-63
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 6.9E-65
Sequence
Target Sequence 
>C. ELEGANS:179743_AT
acactgtgacctgccaacaagttgagaataggaagtgtaatcctgaagcggtaatgttgg
gagtgggagacgctaatcagcctcaaacgatggtcgatgttacctattcagacttcatgt
cgacaccaattgccggaacagccgactccacttccacaatgaaaattagctgctctgcaa
ttgatgggtacaccgttttaatgcaattgaatgcacaaacaattccactggaaggccaat
tcgaaccccaagaagtaacaattactgtaacctgcaatagtgctgatatgacgtggacct
atacggcagacgccggaaccggacctgtaactattgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTGTGACCTGCCAACAAGTTGA 222 109 1568 Antisense
GGGAGACGCTAATCAGCCTCAAACG 212 495 1632 Antisense
GGTCGATGTTACCTATTCAGACTTC 259 503 1659 Antisense
AGACTTCATGTCGACACCAATTGCC 515 71 1677 Antisense
CACCAATTGCCGGAACAGCCGACTC 20 203 1691 Antisense
CCGACTCCACTTCCACAATGAAAAT 680 263 1709 Antisense
GCTGCTCTGCAATTGATGGGTACAC 264 297 1736 Antisense
GATGGGTACACCGTTTTAATGCAAT 323 407 1750 Antisense
CTGGAAGGCCAATTCGAACCCCAAG 688 239 1795 Antisense
TGACGTGGACCTATACGGCAGACGC 2 569 1856 Antisense
GGAACCGGACCTGTAACTATTGATG 235 529 1882 Antisense
Sequence Source Affymetrix Proprietary Database