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[179742_at]

Description Y63D3A.8 /REP_DB=WormBase Gene ID /WP=CE20340 /TR=Q9XTE6 /GB=CAA21712.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 63      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 100.8
(3)
A 		15.7
(-3)
A 		86.5
(2)
A 		21.3
(-2.6)
A 		85
B 71.9
(3)
A 		43.3
(-0.4)
A 		54.9
(1)
A 		22.1
(-3)
A 		50
C 91
(3)
P 		42.4
(-3)
A 		44.7
(-2.7)
A 		57.3
(-1.2)
A 		49
avr 87.9
(3) 		33.8
(-3) 		62
(0.1) 		33.6
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 133.7
(3)
A 		79.9
(0.3)
A 		15.5
(-3)
A 		50.6
(-1.2)
A 		25.4
(-2.5)
A 		74.5
(-0)
A 		118
B 58
(0.8)
A 		59.6
(0.9)
A 		6.5
(-3)
A 		88
(3)
A 		44.6
(-0.2)
A 		27.8
(-1.4)
A 		82
C 88.2
(3)
A 		72.5
(1.5)
A 		48.9
(-0.6)
A 		40.1
(-1.4)
A 		23.3
(-3)
A 		54.4
(-0.1)
A 		65
avr 93.3
(3) 		70.7
(1.1) 		23.6
(-3) 		59.6
(0.1) 		31.1
(-2.4) 		52.2
(-0.5) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 36.7
(3)
A 		3.4
(-2.9)
A 		22.6
(0.5)
A 		3.1
(-3)
A 		34
B 22.9
(3)
A 		10.7
(-1)
A 		12.7
(-0.4)
A 		4.7
(-3)
A 		18
C 30.1
(3)
P 		12.2
(-2.3)
A 		15.6
(-1.3)
A 		9.7
(-3)
A 		20
avr 29.9
(3) 		8.8
(-2.3) 		17
(-0.2) 		5.8
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 24.7
(2.1)
A 		28.4
(3)
A 		3.4
(-3)
A 		12.8
(-0.7)
A 		7.7
(-2)
A 		18.1
(0.5)
A 		25
B 20.2
(2.1)
A 		19.8
(2)
A 		1.6
(-3)
A 		23.3
(3)
A 		18.1
(1.6)
A 		10.4
(-0.6)
A 		22
C 32.7
(3)
A 		22.1
(0.5)
A 		12.4
(-1.9)
A 		8.1
(-2.9)
A 		7.6
(-3)
A 		18.2
(-0.5)
A 		25
avr 25.9
(3) 		23.4
(2.3) 		5.8
(-3) 		14.7
(-0.3) 		11.1
(-1.4) 		15.6
(-0.1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179742_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2538
Sequence Type Exemplar sequence
Representative Public ID Y63D3A.8 NCBI
Target Description Y63D3A.8 /REP_DB=WormBase Gene ID /WP=CE20340 /TR=Q9XTE6 /GB=CAA21712.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061065 NCBI Caenorhabditis elegans Y63D3A.8 (Y63D3A.8) mRNA, complete cds. 11/11 None
Y63D3A.8 ENSEMBL cdna:known chromosome:CEL140:I:14122312:14126700:1 gene:Y63D3A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042292 7/11 Cross Hyb Matching Probes None
GENEFINDER00000042297 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14122255-14125967(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y63D3A.8
Entrez Gene 173280 Entrez gene
SwissProt Q9XTE6 EMBL-EBI
WormBase CE20340 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9401 phosphoenolpyruvate-dependent sugar phosphotransferase system inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21712 Hypothetical protein Y63D3A.8 [Caenorhabditis elegans] emb|CAB04553.1| Hypothetical protein Y63D3A.8 [Caenorhabditis elegans] ref|NP_493466.1| Y63D3A.8 [Caenorhabditis elegans] 1.0E-178
blast CAE71811 Hypothetical protein CBG18826 [Caenorhabditis briggsae] 1.0E-127
blast NP_494378 K12H6.6a [Caenorhabditis elegans] gb|AAF39936.1| Hypothetical protein K12H6.6a [Caenorhabditis elegans] 1.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493466.1 6 7-29,34-52,112-131,191-213,233-255,270-292
Y63D3A.8 6 7-29,34-52,112-131,191-213,233-255,270-292
Sequence
Target Sequence 
>C. ELEGANS:179742_AT
aattatcgagcttcttttccatcatgttgtcgttctttccgcgttcgccgtcacaatgtt
tttcaaccgattcctcggcgtcgttgtgttcggattgctcatggagctcaactcgatttt
cctgcactcgaggagcttgttgaacttgtacggagtcgacaagaagagcccatcgttccg
tataatcgctctgctcaatatggtgacacttttcgcgttccgtctctgcgtttctgcgta
tttagtctattttgtggtggtctcaattccggatctcgagtggtatgtatcaattattaa
cggtctagtcatcgcctcgctcgcctccacaaatacagtgctcacttaccggcttttggc
agctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATCGAGCTTCTTTTCCATCAT 710 175 528 Antisense
TTTTCCATCATGTTGTCGTTCTTTC 641 677 542 Antisense
GTTCGCCGTCACAATGTTTTTCAAC 42 443 570 Antisense
TCGTTGTGTTCGGATTGCTCATGGA 86 605 608 Antisense
GATTTTCCTGCACTCGAGGAGCTTG 616 429 642 Antisense
CGACAAGAAGAGCCCATCGTTCCGT 40 253 684 Antisense
GTCTCTGCGTTTCTGCGTATTTAGT 353 469 749 Antisense
TGGTCTCAATTCCGGATCTCGAGTG 646 549 785 Antisense
TATTAACGGTCTAGTCATCGCCTCG 532 659 822 Antisense
TCGCCTCCACAAATACAGTGCTCAC 66 599 848 Antisense
TCACTTACCGGCTTTTGGCAGCTGA 251 625 869 Antisense
Sequence Source Affymetrix Proprietary Database