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[179741_at]

Description T11F8.2 /REP_DB=WormBase Gene ID /WP=CE17235 /TR=O44193 /GB=AAB88556.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 29      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 26.5
(-0.7)
A 		46.2
(3)
A 		14.5
(-3)
A 		28.3
(-0.4)
A 		32
B 51.7
(3)
M 		30.3
(-2.2)
A 		26.8
(-3)
A 		47
(1.9)
P 		25
C 43.5
(1.9)
P 		33.8
(0)
A 		18.1
(-3)
A 		49
(3)
A 		31
avr 40.6
(2.8) 		36.8
(1.7) 		19.8
(-3) 		41.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 45.6
(0.4)
A 		8.8
(-3)
A 		28.3
(-1.2)
A 		39.6
(-0.1)
A 		73.5
(3)
P 		37.2
(-0.4)
A 		65
B 28
(0.2)
A 		17.9
(-1.1)
A 		48.9
(3)
A 		3.7
(-3)
A 		43.3
(2.3)
M 		35.5
(1.2)
P 		45
C 32.4
(-1.8)
P 		58.3
(3)
A 		25.9
(-3)
A 		35.8
(-1.2)
A 		31.1
(-2)
A 		57
(2.8)
P 		32
avr 35.3
(-0.7) 		28.3
(-2.5) 		34.4
(-0.9) 		26.4
(-3) 		49.3
(3) 		43.2
(1.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.7
(2.7)
A 		10
(3)
A 		3.8
(-3)
A 		4.1
(-2.7)
A 		6
B 16.5
(3)
M 		7.5
(-2.2)
A 		6.2
(-3)
A 		10
(-0.8)
P 		10
C 14.4
(3)
P 		9.7
(-0.5)
A 		6.3
(-3)
A 		8.3
(-1.5)
A 		8
avr 13.5
(3) 		9.1
(-0.3) 		5.4
(-3) 		7.5
(-1.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.4
(-1.3)
A 		3.1
(-3)
A 		6.2
(-2)
A 		10
(-0.8)
A 		22.2
(3)
P 		9.1
(-1.1)
A 		19
B 9.8
(0.2)
A 		6
(-1.2)
A 		11.9
(0.9)
A 		1
(-3)
A 		17.6
(3)
M 		13.2
(1.4)
P 		17
C 12
(-0.4)
P 		17.8
(2.4)
A 		6.6
(-3)
A 		7.2
(-2.7)
A 		10.1
(-1.3)
A 		19.1
(3)
P 		13
avr 10.1
(-0.7) 		9
(-1.3) 		8.2
(-1.8) 		6.1
(-3) 		16.6
(3) 		13.8
(1.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10881
Sequence Type Exemplar sequence
Representative Public ID T11F8.2 NCBI
Target Description T11F8.2 /REP_DB=WormBase Gene ID /WP=CE17235 /TR=O44193 /GB=AAB88556.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068416(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068416 NCBI Caenorhabditis elegans T11F8.2 (T11F8.2) mRNA, complete cds. 9/11 None
SNAP00000002005 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5477258:5478695:1 10/11 None
GENEFINDER00000002013 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5477258:5478695:1 9/11 None
T11F8.2 ENSEMBL cdna:known chromosome:CEL140:IV:5477201:5478695:1 gene:T11F8.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5477206-5478701(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11F8.2
Entrez Gene 188417 Entrez gene
SwissProt O44193 EMBL-EBI
WormBase CE35005 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500817 T11F8.2 [Caenorhabditis elegans] gb|AAB88556.2| Hypothetical protein T11F8.2 [Caenorhabditis elegans] 0.0
blast NP_500818 T11F8.1 [Caenorhabditis elegans] gb|AAB88555.1| Hypothetical protein T11F8.1 [Caenorhabditis elegans] 2.0E-49
blast NP_500818 T11F8.1 [Caenorhabditis elegans] gb|AAB88555.1| Hypothetical protein T11F8.1 [Caenorhabditis elegans] 8.0E-49
blast AAB88316 Hypothetical protein C24D10.5 [Caenorhabditis elegans] ref|NP_500727.1| C24D10.5 [Caenorhabditis elegans] 6.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500817.2 10 26-48,63-85,98-120,124-146,167-185,195-217,270-287,291-313,333-352,362-383
T11F8.2 10 26-48,63-85,98-120,124-146,167-185,195-217,270-287,291-313,333-352,362-383
SNAP00000002005 10 7-29,44-66,79-101,105-127,148-166,176-198,267-284,288-310,330-349,359-380
GENEFINDER00000002013 10 7-29,44-66,79-101,105-127,148-166,176-198,259-276,280-302,322-341,351-372
Sequence
Target Sequence 
>C. ELEGANS:179741_AT
tgtggttagctgcattcttctacttcccatcactttttctcaattacaaaacatacttgg
cagccagtgacggacaaattaaacttgcggacaaattaaacaaattaaacttgaaattct
acgaatacgaagtatttgaccttaccgatgaatggcacagatatactctattcgggattt
tccgacaattgttctctacgacgacgtacttcgcgtttttcgtttgcaatgtgctgactg
ctttggtttatttcttgttcattcacgagatggaaccattgtgccgtaacatgcaatgca
atgatggatggaaaaatgtttgtggatcgtggtttcacatgttccttgtgccaatcggag
tgctctgtgtagcaatgtacgctggagattatacctacgtgttgaaggattgggtacctg
ctctctactacataccagcaattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGTTAGCTGCATTCTTCTACTT 501 555 596 Antisense
GGATTTTCCGACAATTGTTCTCTAC 671 509 770 Antisense
TGTTCTCTACGACGACGTACTTCGC 481 561 785 Antisense
GTACTTCGCGTTTTTCGTTTGCAAT 531 457 801 Antisense
TGTGCTGACTGCTTTGGTTTATTTC 291 557 825 Antisense
GGTTTATTTCTTGTTCATTCACGAG 482 505 840 Antisense
GATGGAACCATTGTGCCGTAACATG 123 403 864 Antisense
GGATCGTGGTTTCACATGTTCCTTG 255 513 919 Antisense
ATGTTCCTTGTGCCAATCGGAGTGC 415 47 934 Antisense
TGAAGGATTGGGTACCTGCTCTCTA 393 575 998 Antisense
CTCTCTACTACATACCAGCAATTCT 540 229 1016 Antisense
Sequence Source Affymetrix Proprietary Database