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[179740_s_at]

Description C23H3.1 /REP_DB=WormBase Gene ID /WP=CE08320 /TR=P91082 /GB=AAK31442.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 40      6grp_total > 28      4grp_total > 46      6grp_cgc > 03      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 789.1
(3)
P 		679.8
(0.3)
P 		640
(-0.7)
P 		544.3
(-3)
P 		245
B 823.8
(3)
P 		626.3
(-0.4)
P 		479.8
(-3)
P 		594.2
(-1)
P 		344
C 711.2
(3)
P 		525.6
(-2.4)
P 		573.2
(-1)
P 		503.4
(-3)
P 		208
avr 774.7
(3) 		610.6
(-1.3) 		564.3
(-2.6) 		547.3
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 873.4
(3)
P 		728.7
(1.1)
P 		421.1
(-3)
P 		659.8
(0.2)
P 		626.3
(-0.3)
P 		623.9
(-0.3)
P 		452
B 776.5
(3)
P 		711.7
(2)
P 		403
(-3)
P 		634.3
(0.7)
P 		626.3
(0.6)
P 		576.9
(-0.2)
P 		374
C 694.4
(2.2)
P 		717.3
(3)
P 		538.9
(-3)
P 		593.7
(-1.2)
P 		655.9
(0.9)
P 		568.1
(-2)
P 		178
avr 781.4
(3) 		719.2
(1.9) 		454.3
(-3) 		629.3
(0.2) 		636.2
(0.3) 		589.6
(-0.5) 		327
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 287.3
(3)
P 		147.6
(-1)
P 		167.3
(-0.5)
P 		79.7
(-3)
P 		208
B 262.7
(3)
P 		154.7
(-1.3)
P 		111.2
(-3)
P 		126.6
(-2.4)
P 		152
C 235.4
(3)
P 		151.1
(-0.4)
P 		199.8
(1.6)
P 		84.9
(-3)
P 		151
avr 261.8
(3) 		151.1
(-1) 		159.4
(-0.7) 		97.1
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 161
(-0.5)
P 		259.1
(3)
P 		91.7
(-3)
P 		167.3
(-0.3)
P 		189
(0.5)
P 		151.9
(-0.8)
P 		167
B 270.2
(3)
P 		236.9
(1.8)
P 		97.9
(-3)
P 		168
(-0.6)
P 		254.4
(2.4)
P 		215.1
(1.1)
P 		172
C 257.4
(3)
P 		218.9
(1.3)
P 		137.2
(-2.2)
P 		119.4
(-3)
P 		212.2
(1)
P 		190.2
(0.1)
P 		138
avr 229.5
(2.6) 		238.3
(3) 		108.9
(-3) 		151.6
(-1) 		218.5
(2.1) 		185.7
(0.6) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179740_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5476
Sequence Type Exemplar sequence
Representative Public ID C23H3.1 NCBI
Target Description C23H3.1 /REP_DB=WormBase Gene ID /WP=CE08320 /TR=P91082 /GB=AAK31442.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061251 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-26) (egl-26) mRNA, complete cds. 11/11 None
SNAP00000015920 ENSEMBL cdna:SNAP chromosome:CEL140:II:69681:70956:1 11/11 None
GENEFINDER00000015925 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:69681:70956:1 11/11 None
C23H3.1 ENSEMBL cdna:known chromosome:CEL140:II:69660:71279:1 gene:C23H3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:69680-70956(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol egl-26
Ensembl C23H3.1
Entrez Gene 173392 Entrez gene
SwissProt P91082 EMBL-EBI
WormBase CE08320 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31442 Egg laying defective protein 26 [Caenorhabditis elegans] ref|NP_493652.1| EGg Laying defective family member (egl-26) [Caenorhabditis elegans] 1.0E-178
blast CAE62817 Hypothetical protein CBG06994 [Caenorhabditis briggsae] 1.0E-156
Sequence
Target Sequence 
>C. ELEGANS:179740_S_AT
tgtgctaccattttgtctgcgatgctcaagaatccgaatcgtttgccgatgcccttgccg
ttttcagtggtgcatctgcccatgttgtctatgatacatggtttgagtttgtctacgcat
tggtcgaggtgtcagatgtgccgcccaaaatattcagagcttctcatccgttgatttgta
ggtctggagagcaggttgtaaaatatgctgaacatctgcaacgtgagcttgaaaactatg
acatccgtcgttgcaactgccaacatttctcatcggagtgttcaactggcgtcccattct
cttatgacatgacttctaacttcaaatatcttgcttgcacagtactgaaaccaacgtcta
ctgtcgtcaacgccatgactaggcccaatcgggatcgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCTACCATTTTGTCTGCGATGC 451 555 536 Antisense
TGCCGTTTTCAGTGGTGCATCTGCC 428 585 591 Antisense
TGCATCTGCCCATGTTGTCTATGAT 363 579 606 Antisense
TGGTCGAGGTGTCAGATGTGCCGCC 226 553 656 Antisense
GCCGCCCAAAATATTCAGAGCTTCT 10 287 675 Antisense
GAGCTTCTCATCCGTTGATTTGTAG 290 389 692 Antisense
CTATGACATCCGTCGTTGCAACTGC 468 223 771 Antisense
TGCAACTGCCAACATTTCTCATCGG 55 577 787 Antisense
CGTCCCATTCTCTTATGACATGACT 70 247 825 Antisense
GTCTACTGTCGTCAACGCCATGACT 299 469 891 Antisense
TGACTAGGCCCAATCGGGATCGCTC 621 569 911 Antisense
Sequence Source Affymetrix Proprietary Database