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[179739_at]

Description F57G12.2 /REP_DB=WormBase Gene ID /WP=CE03427 /TR=Q20956 /GB=CAA91535.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 57.8
(-3)
A 		174.9
(1.5)
A 		212.4
(3)
A 		149
(0.5)
A 		155
B 75.2
(-3)
A 		231.1
(3)
A 		124.6
(-1.1)
A 		98.9
(-2.1)
A 		156
C 118.2
(-3)
A 		155.4
(-1.2)
A 		189.3
(0.5)
A 		241.2
(3)
A 		123
avr 83.7
(-3) 		187.1
(3) 		175.4
(2.3) 		163
(1.6) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 109.3
(-1.1)
A 		202.6
(2)
A 		112.7
(-1)
A 		191
(1.6)
A 		231.7
(3)
A 		53.8
(-3)
A 		178
B 122.4
(-0.3)
A 		138.1
(0.4)
A 		112.8
(-0.7)
A 		154.9
(1.2)
A 		194.5
(3)
A 		63.6
(-3)
A 		131
C 57.3
(-2.8)
A 		209.5
(3)
A 		177.4
(1.8)
A 		206.6
(2.9)
A 		155.7
(1)
A 		51.7
(-3)
A 		158
avr 96.3
(-1.3) 		183.4
(2.5) 		134.3
(0.4) 		184.2
(2.6) 		194
(3) 		56.4
(-3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 21
(-3)
A 		38
(-0)
A 		55.5
(3)
A 		21.8
(-2.9)
A 		35
B 24
(-2.5)
A 		57.1
(3)
A 		28.9
(-1.7)
A 		21.1
(-3)
A 		36
C 39.1
(-3)
A 		44.7
(-1.8)
A 		66
(3)
A 		40.7
(-2.6)
A 		27
avr 28
(-3) 		46.6
(2.1) 		50.1
(3) 		27.9
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 20.2
(-2.3)
A 		72
(3)
A 		24.6
(-1.8)
A 		48.4
(0.6)
A 		69.9
(2.8)
A 		13.1
(-3)
A 		59
B 42.6
(-0.9)
A 		46
(-0.6)
A 		27.4
(-2.6)
A 		41
(-1.1)
A 		79
(3)
A 		23.7
(-3)
A 		55
C 21.2
(-2.5)
A 		63.9
(3)
A 		45.2
(0.6)
A 		41.5
(0.1)
A 		50.4
(1.3)
A 		17.3
(-3)
A 		47
avr 28
(-1.8) 		60.6
(2.3) 		32.4
(-1.2) 		43.6
(0.2) 		66.4
(3) 		18
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16260
Sequence Type Exemplar sequence
Representative Public ID F57G12.2 NCBI
Target Description F57G12.2 /REP_DB=WormBase Gene ID /WP=CE03427 /TR=Q20956 /GB=CAA91535.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077633 NCBI Caenorhabditis elegans F57G12.2 (F57G12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000034388 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12156505:12159960:-1 11/11 None
F57G12.2 ENSEMBL cdna:known chromosome:CEL140:X:12157313:12159960:-1 gene:F57G12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034382 8/11 Cross Hyb Matching Probes None
SNAP00000034383 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12157312-12159960(-) 98.53 100.0
Public Domain and Genome References
Gene Title
Ensembl F57G12.2
Entrez Gene 186478 Entrez gene
SwissProt Q20956 EMBL-EBI
WormBase CE03427 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91535 Hypothetical protein F57G12.2 [Caenorhabditis elegans] ref|NP_510034.1| F57G12.2 [Caenorhabditis elegans] 2.0E-92
blast CAA91535 Hypothetical protein F57G12.2 [Caenorhabditis elegans] ref|NP_510034.1| F57G12.2 [Caenorhabditis elegans] 3.0E-92
blast CAE69878 Hypothetical protein CBG16217 [Caenorhabditis briggsae] 1.0E-89
blast CAE69878 Hypothetical protein CBG16217 [Caenorhabditis briggsae] 5.0E-49
Sequence
Target Sequence 
>C. ELEGANS:179739_AT
gaagatgctctgatgattgctcgaaaaataaaacaagaatttgacgaagcaaatacccct
tcaccagctccaccaccaacgcacattgtgagagaacgactacgtcaagtggaagtcgag
cgaccttctgccccaattgttttcgatcatttcatttgtatgcgcattggattaaattct
aaaaacaatgttcagaggctgatggctcttttgactgcccatgaatttgttgaccttact
gtgctgccaggaccgtcaatgataccgcctcctctacctcaaatgatcccgatgggaatc
ccacgtcacaattctgttccaccaacccgttttataggggcatgccaacaagaggcatcc
acttcgaatggagcaccgcatgaaataattaacatggattcacatataagaatgacgcca
cagttcccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATGCTCTGATGATTGCTCGAA 664 337 88 Antisense
TGACGAAGCAAATACCCCTTCACCA 532 569 129 Antisense
TCCACCACCAACGCACATTGTGAGA 409 589 156 Antisense
AGTGGAAGTCGAGCGACCTTCTGCC 579 55 195 Antisense
TGCCCCAATTGTTTTCGATCATTTC 78 585 216 Antisense
GAGGCTGATGGCTCTTTTGACTGCC 452 405 282 Antisense
GAATTTGTTGACCTTACTGTGCTGC 444 325 310 Antisense
TGCCAGGACCGTCAATGATACCGCC 455 585 332 Antisense
CCTCTACCTCAAATGATCCCGATGG 704 267 358 Antisense
GATCCCGATGGGAATCCCACGTCAC 142 417 372 Antisense
TAAGAATGACGCCACAGTTCCCAAG 632 637 494 Antisense
Sequence Source Affymetrix Proprietary Database