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[179738_at]

Description F10D2.8 /REP_DB=WormBase Gene ID /WP=CE09319 /TR=O16917 /GB=AAC48238.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 16      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 11.5
(-2)
A 		19.8
(3)
A 		17.9
(1.8)
A 		9.9
(-3)
A 		10
B 5.7
(-2.9)
A 		5.2
(-3)
A 		35.1
(3)
A 		29.6
(1.9)
A 		30
C 7.7
(-2.5)
A 		26.1
(-1)
A 		1.6
(-3)
A 		76.5
(3)
A 		75
avr 8.3
(-3) 		17
(-1.3) 		18.2
(-1) 		38.7
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 26.4
(1.3)
A 		1.4
(-3)
A 		36.5
(3)
A 		12.1
(-1.2)
A 		29.4
(1.8)
A 		8.1
(-1.9)
A 		35
B 9.3
(-2.7)
A 		35.6
(3)
A 		9.2
(-2.7)
A 		12.7
(-1.9)
A 		33.3
(2.5)
A 		7.8
(-3)
A 		28
C 39.9
(2.1)
A 		45.3
(3)
A 		31.5
(0.8)
A 		8.5
(-3)
A 		8.6
(-3)
A 		26.4
(-0.1)
A 		37
avr 25.2
(2.2) 		27.4
(3) 		25.7
(2.4) 		11.1
(-3) 		23.8
(1.7) 		14.1
(-1.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.2
(2.1)
A 		4.3
(2.3)
A 		4.7
(3)
A 		1.5
(-3)
A 		3
B 1.8
(-2.6)
A 		1.3
(-3)
A 		8.1
(3)
A 		6.3
(1.4)
A 		7
C 2.5
(-2.1)
A 		7.5
(0.4)
A 		0.6
(-3)
A 		12.9
(3)
A 		12
avr 2.8
(-3) 		4.4
(-0.7) 		4.5
(-0.5) 		6.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.9
(0.1)
A 		0.5
(-3)
A 		7.9
(2.3)
A 		3.1
(-1.1)
A 		8.9
(3)
A 		2
(-1.9)
A 		8
B 3.2
(-2.5)
A 		11.9
(2.2)
A 		2.2
(-3)
A 		3.4
(-2.4)
A 		13.5
(3)
A 		2.9
(-2.6)
A 		11
C 14.8
(3)
A 		13.8
(2.5)
A 		8
(-0.1)
A 		1.7
(-3)
A 		2.8
(-2.5)
A 		8.9
(0.3)
A 		13
avr 7.6
(1.9) 		8.7
(3) 		6
(0.3) 		2.7
(-3) 		8.4
(2.7) 		4.6
(-1.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11924
Sequence Type Exemplar sequence
Representative Public ID F10D2.8 NCBI
Target Description F10D2.8 /REP_DB=WormBase Gene ID /WP=CE09319 /TR=O16917 /GB=AAC48238.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171481 NCBI Caenorhabditis elegans F10D2.12 (F10D2.12) mRNA, complete cds. 11/11 None
SNAP00000033809 ENSEMBL cdna:SNAP chromosome:CEL140:V:7151280:7153278:-1 11/11 None
GENEFINDER00000033823 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7151280:7153278:-1 11/11 None
F10D2.12 ENSEMBL cdna:known chromosome:CEL140:V:7151280:7152681:-1 gene:F10D2.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7151280-7153279(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10D2.12
Entrez Gene 266913 Entrez gene
SwissProt Q8MNX7 EMBL-EBI
WormBase CE30746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741564 F10D2.12 [Caenorhabditis elegans] gb|AAM29670.1| Hypothetical protein F10D2.12 [Caenorhabditis elegans] 0.0
blast T28722 hypothetical protein F10D2.8 - Caenorhabditis elegans 0.0
blast NP_504816 F10D2.2a [Caenorhabditis elegans] gb|AAC48233.2| Hypothetical protein F10D2.2a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.7E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.7E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.7E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741564.1 1 330-352
F10D2.12 1 330-352
SNAP00000033809 2 5-27,455-477
GENEFINDER00000033823 2 5-27,440-462
Sequence
Target Sequence 
>C. ELEGANS:179738_AT
gacattgaggactttgcacgaggaattcaaaatattcattttgtaaaatgggtaccacaa
actgcacttttggctaatcgacgtctgtcagctttcttcactcatgctggtctgggtagt
attaatgaagtcagctatttgggcaaaccatcaattttgtgccctctctttgcggatcaa
atgagaaatgcaaaaatgcttgtccgtcacaatggatcaattgagttatcgaaatatgat
ctgggaaattctaagaaaataattgaagcttttcaagcaattttgtttgattcttcgtat
gcggagaatgctcagaaattagcagaacaactcgagaatcagccgattaaaccagaaaaa
atgatggttaaacatgcggaatttgcagccagatttgggcgtctaccatcactggatcca
tattcaagaaaaatgtctttcgttgaatatttcttgcttgacgttgcaaccatttgtgtt
ttagttctggcatgtgtagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTGAGGACTTTGCACGAGGAA 82 369 934 Antisense
ACTGCACTTTTGGCTAATCGACGTC 147 99 994 Antisense
TAATCGACGTCTGTCAGCTTTCTTC 492 633 1008 Antisense
CTTCACTCATGCTGGTCTGGGTAGT 62 219 1029 Antisense
TGAAGTCAGCTATTTGGGCAAACCA 317 575 1059 Antisense
CAAACCATCAATTTTGTGCCCTCTC 576 191 1077 Antisense
TGCCCTCTCTTTGCGGATCAAATGA 657 583 1093 Antisense
GAACAACTCGAGAATCAGCCGATTA 230 353 1258 Antisense
AACATGCGGAATTTGCAGCCAGATT 667 137 1304 Antisense
TGCTTGACGTTGCAACCATTTGTGT 52 579 1388 Antisense
GTGTTTTAGTTCTGGCATGTGTAGT 128 485 1409 Antisense
Sequence Source Affymetrix Proprietary Database