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[179737_at]

Description R11E3.4 /REP_DB=WormBase Gene ID /WP=CE19546 /TR=Q9TYX6 /GB=AAK39266.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      6grp_total > 31      4grp_total > 32      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 44.9
(-3)
A 		53.8
(-1.2)
A 		72.7
(2.8)
A 		73.8
(3)
A 		29
B 71.4
(2.7)
A 		50.7
(-0.9)
P 		73.3
(3)
A 		38.9
(-3)
A 		34
C 60.2
(-1.7)
A 		49.3
(-3)
P 		100.5
(3)
P 		87.7
(1.5)
A 		51
avr 58.8
(-1.5) 		51.3
(-3) 		82.2
(3) 		66.8
(0) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 88.7
(2.7)
P 		52.2
(-1.6)
A 		87.9
(2.6)
A 		90.8
(2.9)
M 		91.3
(3)
A 		40.3
(-3)
A 		51
B 66.3
(-0.8)
P 		91.8
(3)
P 		73.6
(0.3)
A 		84.7
(2)
A 		60
(-1.7)
P 		51
(-3)
A 		41
C 55.4
(-3)
P 		99.4
(2.4)
A 		104.5
(3)
P 		70.4
(-1.2)
P 		70.3
(-1.2)
A 		60.6
(-2.4)
P 		49
avr 70.1
(0.1) 		81.1
(1.8) 		88.7
(3) 		82
(1.9) 		73.9
(0.7) 		50.6
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 16.4
(1.1)
A 		11.7
(-2.3)
A 		19
(3)
A 		10.8
(-3)
A 		8
B 22.8
(3)
A 		12.5
(-1.3)
P 		17
(0.6)
A 		8.3
(-3)
A 		15
C 19.9
(-1.4)
A 		14.2
(-3)
P 		35
(3)
P 		14.8
(-2.8)
A 		21
avr 19.7
(1.1) 		12.8
(-2.3) 		23.7
(3) 		11.3
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 16.4
(-0.8)
P 		18.5
(-0.1)
A 		19.2
(0.2)
A 		23
(1.4)
M 		27.6
(3)
A 		9.8
(-3)
A 		18
B 23.1
(-0.5)
P 		30.5
(3)
P 		17.9
(-3)
A 		22.4
(-0.9)
A 		24.4
(0.1)
P 		19
(-2.5)
A 		13
C 20.6
(-0.6)
P 		30.3
(3)
A 		26.6
(1.6)
P 		14.2
(-3)
P 		22.7
(0.2)
A 		20.3
(-0.7)
P 		16
avr 20
(-0.8) 		26.4
(3) 		21.2
(-0.1) 		19.9
(-0.9) 		24.9
(2.1) 		16.4
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10826
Sequence Type Exemplar sequence
Representative Public ID R11E3.4 NCBI
Target Description R11E3.4 /REP_DB=WormBase Gene ID /WP=CE19546 /TR=Q9TYX6 /GB=AAK39266.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068241 NCBI Caenorhabditis elegans R11E3.4 (R11E3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000009851 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4775233:4780476:-1 11/11 None
R11E3.4 ENSEMBL cdna:known chromosome:CEL140:IV:4775233:4780074:-1 gene:R11E3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009824 7/11 Cross Hyb Matching Probes None
SNAP00000009825 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4775238-4780080(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11E3.4
Entrez Gene 187813 Entrez gene
SwissProt Q9TYX6 EMBL-EBI
WormBase CE19546 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39266 Hypothetical protein R11E3.4 [Caenorhabditis elegans] ref|NP_500642.1| R11E3.4 [Caenorhabditis elegans] 0.0
blast CAE58584 Hypothetical protein CBG01750 [Caenorhabditis briggsae] 2.0E-99
blast CAE58584 Hypothetical protein CBG01750 [Caenorhabditis briggsae] 9.0E-94
blast AAK84599 Hypothetical protein Y24D9A.2 [Caenorhabditis elegans] ref|NP_500555.2| Y24D9A.2 [Caenorhabditis elegans] 1.0E-70
blast AAK84599 Hypothetical protein Y24D9A.2 [Caenorhabditis elegans] ref|NP_500555.2| Y24D9A.2 [Caenorhabditis elegans] 2.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 7.8E-38
Pfam IPR001214 EMBL-EBI Nuclear protein SET 7.8E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009851 2 5-27,82-104
Sequence
Target Sequence 
>C. ELEGANS:179737_AT
gtcccggatacctgaatgagcttaaaggaggttgtctgtgtgagagaattgggtgcccga
ataccgagagttttgggattctgtcaagagctacgaagaaggaggtatcgaagattgatt
ttccttcttctttttttttaaattttccaaattggctaaaatctaaaattttcagctcaa
acaatactatgccttacgacatcattttgagtacaagagctgaaccagagctgacaacta
gattctttttcaaaggaacgttcacgtgtcaaagtcaccgggctccattcattcaagata
ttcaagcatgggaggaagatacattcaaacccaacgaccatattgacacgtggcacaagt
ttgagatcgtcaattcgacagcgatgacatatgaaatgcacgccgaggcgcatggtgatg
gtctttggaataacttttacgaaatctcgttttctatgcgccacacatgcttcagcccaa
ttgatatttcacgtggaatgaaatttaagcaaagcgggttgattcttaaaccagaagcat
tcccggttattgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCCGGATACCTGAATGAGCTTAA 635 473 1655 Antisense
CTGTGTGAGAGAATTGGGTGCCCGA 80 239 1690 Antisense
GGGTGCCCGAATACCGAGAGTTTTG 301 497 1705 Antisense
AATACTATGCCTTACGACATCATTT 14 173 1837 Antisense
GTTCACGTGTCAAAGTCACCGGGCT 81 445 1914 Antisense
CCGGGCTCCATTCATTCAAGATATT 610 265 1932 Antisense
GATACATTCAAACCCAACGACCATA 372 423 1972 Antisense
GCACGCCGAGGCGCATGGTGATGGT 263 313 2052 Antisense
ACGAAATCTCGTTTTCTATGCGCCA 125 93 2093 Antisense
CCACACATGCTTCAGCCCAATTGAT 568 275 2115 Antisense
CCAGAAGCATTCCCGGTTATTGATG 709 271 2185 Antisense
Sequence Source Affymetrix Proprietary Database