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[179736_at]

Description F19C7.3 /REP_DB=WormBase Gene ID /WP=CE04417 /TR=Q19588 /GB=AAA83507.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 22.1
(-1.9)
A 		7.2
(-3)
A 		31.2
(-1.3)
A 		90.9
(3)
A 		84
B 12.1
(1.1)
A 		7.5
(-3)
A 		14.2
(3)
A 		11.7
(0.8)
A 		7
C 29.5
(2.2)
A 		5.4
(-3)
A 		19.4
(0)
A 		33
(3)
A 		28
avr 21.2
(-0.7) 		6.7
(-3) 		21.6
(-0.7) 		45.2
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 6.5
(-3)
A 		7.8
(-2.9)
A 		18.9
(-1.6)
A 		36.3
(0.4)
A 		59
(3)
A 		11
(-2.5)
A 		53
B 13.3
(-2)
A 		7.3
(-3)
A 		42.8
(3)
A 		33.5
(1.4)
A 		29
(0.7)
A 		36.9
(2)
A 		36
C 18.6
(1.6)
A 		16.6
(0.9)
A 		4.2
(-3)
A 		7.7
(-1.9)
A 		11.9
(-0.6)
A 		23.1
(3)
A 		19
avr 12.8
(-2.4) 		10.6
(-3) 		22
(0) 		25.8
(1) 		33.3
(3) 		23.7
(0.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.1
(0.3)
A 		1.6
(-3)
A 		8.2
(0.4)
A 		13.3
(3)
A 		12
B 3.9
(3)
A 		1.9
(-3)
A 		3.3
(1.2)
A 		2.5
(-1.2)
A 		2
C 9.8
(3)
A 		1.5
(-3)
A 		6.8
(0.8)
A 		5.6
(-0)
A 		8
avr 7.3
(3) 		1.7
(-3) 		6.1
(1.7) 		7.1
(2.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.8
(-2.4)
A 		4.1
(-2)
A 		9.2
(-0.1)
A 		17.8
(3)
A 		2.7
(-2.5)
A 		17
B 4.6
(-1.8)
A 		2.4
(-3)
A 		10.4
(1.2)
A 		8.9
(0.4)
A 		11.8
(1.9)
A 		13.8
(3)
A 		11
C 6.9
(2.3)
A 		5.1
(0.6)
A 		1.1
(-3)
A 		1.5
(-2.6)
A 		3.8
(-0.5)
A 		7.7
(3)
A 		7
avr 4.2
(-2.4) 		3.4
(-3) 		5.2
(-1.6) 		6.5
(-0.6) 		11.1
(3) 		8.1
(0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179736_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10813
Sequence Type Exemplar sequence
Representative Public ID F19C7.3 NCBI
Target Description F19C7.3 /REP_DB=WormBase Gene ID /WP=CE04417 /TR=Q19588 /GB=AAA83507.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068193 NCBI Caenorhabditis elegans F19C7.3 (F19C7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000030508 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4594649:4598975:1 11/11 None
F19C7.3 ENSEMBL cdna:known chromosome:CEL140:IV:4597641:4598975:1 gene:F19C7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006738 2/11 Cross Hyb Matching Probes None
SNAP00000030496 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4597646-4598981(+) 100.0 100.0
chrIV:4591418-4592734(+) 94.86 94.86
Public Domain and Genome References
Gene Title
Ensembl F19C7.3
Entrez Gene 184679 Entrez gene
SwissProt Q19588 EMBL-EBI
WormBase CE04417 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83507 Hypothetical protein F19C7.3 [Caenorhabditis elegans] ref|NP_500594.1| F19C7.3 [Caenorhabditis elegans] 1.0E-179
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 1.0E-114
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 6.0E-99
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 7.0E-99
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 4.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-7
Pfam IPR008758 EMBL-EBI Peptidase S28 2.1E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030508 3 77-99,114-136,149-168
Sequence
Target Sequence 
>C. ELEGANS:179736_AT
acttgttctcgattgaccacgtggatttaattattaatacagacaaactttttgggaggt
atcgctcaacaattagacatccattgtttcgaaaatgtgattatgtggagcttgttggaa
gaaattcgtttttgtcgaatgaggatatgtattttgtattgaagaatttcaatttgaaaa
atggattctttacagattgtaaattatcgaatgacttcaatatggcggctatgttcaaaa
ttccccgtctgtgtatttttcacgctggtgatataacactgaaacatttattgtccatgg
attgcaaagtcatcaaactttggagacaccagctccacccacaacttatcaatcagttta
tttatcattggatgaaaggagcaatgcccaatttacgaagacttcgcctgaatttatttt
gtgattttagacggattgatgagatgttgaatggagttaaacgttcaaaatgggacaata
aacggcgcccaagaatattttgcgatggaattgaacgcattgattgtgaagatgggaagg
atatactacgaaatgatggacaactggcaacatttttctgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGTTCTCGATTGACCACGTGGA 266 99 317 Antisense
GGTATCGCTCAACAATTAGACATCC 382 505 374 Antisense
GAATGACTTCAATATGGCGGCTATG 644 331 525 Antisense
GCGGCTATGTTCAAAATTCCCCGTC 223 293 541 Antisense
CCCCGTCTGTGTATTTTTCACGCTG 278 259 559 Antisense
GAAACATTTATTGTCCATGGATTGC 263 357 597 Antisense
CATCAAACTTTGGAGACACCAGCTC 593 211 627 Antisense
CTCCACCCACAACTTATCAATCAGT 486 235 649 Antisense
GAAGACTTCGCCTGAATTTATTTTG 474 339 713 Antisense
GGCGCCCAAGAATATTTTGCGATGG 679 541 800 Antisense
GGACAACTGGCAACATTTTTCTGTA 332 525 874 Antisense
Sequence Source Affymetrix Proprietary Database