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[179735_s_at]

Description M04G7.3 /REP_DB=WormBase Gene ID /WP=CE17192 /TR=O44181 /GB=AAB88366.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 29      6grp_total > 26      4grp_total > 13      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 491.2
(0.9)
P 		280.6
(-2.4)
A 		243.1
(-3)
M 		622.2
(3)
P 		379
B 424.1
(-0)
P 		317.2
(-1.8)
A 		246.1
(-3)
A 		602.7
(3)
P 		357
C 523.2
(1.6)
P 		292.1
(-2.7)
A 		273.9
(-3)
P 		600.3
(3)
P 		326
avr 479.5
(0.8) 		296.6
(-2.3) 		254.4
(-3) 		608.4
(3) 		354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 309.3
(2.5)
P 		294.5
(0.6)
P 		299.2
(1.2)
P 		307.4
(2.3)
P 		312.7
(3)
P 		267.7
(-3)
P 		45
B 391.7
(2.4)
P 		406.7
(3)
P 		252.5
(-3)
P 		283.7
(-1.8)
P 		281.5
(-1.9)
P 		323.1
(-0.3)
P 		154
C 312.7
(2.3)
P 		330.4
(3)
P 		279.5
(1.1)
A 		167.5
(-3)
P 		327.6
(2.9)
P 		309.2
(2.2)
P 		163
avr 337.9
(2.6) 		343.9
(3) 		277.1
(-1.4) 		252.9
(-3) 		307.3
(0.6) 		300
(0.1) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 178.9
(3)
P 		60.9
(-3)
A 		63.5
(-2.9)
M 		91.1
(-1.5)
P 		118
B 135.2
(3)
P 		78.3
(-1.4)
A 		57
(-3)
A 		128.4
(2.5)
P 		78
C 173.2
(3)
P 		84
(-3)
A 		95.5
(-2.2)
P 		101.2
(-1.8)
P 		89
avr 162.4
(3) 		74.4
(-2.8) 		72
(-3) 		106.9
(-0.7) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 57
(-3)
P 		104.7
(3)
P 		65.2
(-2)
P 		78
(-0.4)
P 		94.4
(1.7)
P 		65.2
(-2)
P 		48
B 136.3
(3)
P 		135.4
(2.9)
P 		61.3
(-3)
P 		75.1
(-1.9)
P 		114.4
(1.2)
P 		120.5
(1.7)
P 		75
C 115.9
(3)
P 		100.8
(1.9)
P 		71.1
(-0.3)
A 		33.7
(-3)
P 		106
(2.3)
P 		103.5
(2.1)
P 		82
avr 103.1
(1.8) 		113.6
(3) 		65.9
(-2.6) 		62.3
(-3) 		104.9
(2) 		96.4
(1) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179735_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10535
Sequence Type Exemplar sequence
Representative Public ID M04G7.3 NCBI
Target Description M04G7.3 /REP_DB=WormBase Gene ID /WP=CE17192 /TR=O44181 /GB=AAB88366.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028148(11), NM_001028147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028148 NCBI Caenorhabditis elegans M04G7.3b (M04G7.3) mRNA, complete cds. 11/11 None
NM_001028147 NCBI Caenorhabditis elegans M04G7.3a (M04G7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000026152 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:461516:463872:-1 11/11 None
M04G7.3b.1 ENSEMBL cdna:known chromosome:CEL140:IV:461326:463879:-1 gene:M04G7.3 11/11 None
M04G7.3b.2 ENSEMBL cdna:known chromosome:CEL140:IV:461327:481167:-1 gene:M04G7.3 11/11 None
M04G7.3a ENSEMBL cdna:known chromosome:CEL140:IV:461516:481153:-1 gene:M04G7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:461515-463872(-) 100.0 100.0
Public Domain and Genome References
Ensembl M04G7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88366 Hypothetical protein M04G7.3a [Caenorhabditis elegans] ref|NP_001023318.1| M04G7.3a [Caenorhabditis elegans] 0.0
blast AAV34787 Hypothetical protein M04G7.3b [Caenorhabditis elegans] ref|NP_001023319.1| M04G7.3b [Caenorhabditis elegans] 0.0
blast CAE58477 Hypothetical protein CBG01619 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023319.1 7 24-46,66-88,115-137,196-218,251-273,310-332,347-369
NP_001023318.1 7 66-88,108-130,157-179,238-260,293-315,352-374,389-411
M04G7.3b.1 7 24-46,66-88,115-137,196-218,251-273,310-332,347-369
M04G7.3b.2 7 24-46,66-88,115-137,196-218,251-273,310-332,347-369
M04G7.3a 7 66-88,108-130,157-179,238-260,293-315,352-374,389-411
GENEFINDER00000026152 7 24-46,66-88,115-137,196-218,251-273,310-332,347-369
Sequence
Target Sequence 
>C. ELEGANS:179735_S_AT
aatcccgagccaacagtctttcgatcttcgtttgccaagtacaaggcagtgctgatgacg
ttgacgcagaccatcgggccggtatcgattattcttgtcctatcgattttcacagagtac
aaagtgcatgtcagtctgaaggctagaagaaagttattcgagagccagcaaagaagtcgg
tcggtagttctcagcgaagagttgaaggagactgtgtcgagaactgtcgcagtgtttatt
gcagtcaagtttttgatttttagaaccatgccgatcttcttcgacgtatacgagaatctg
tatggaatcgacgagtggggtactgtaatgagcataatggtgcgagtatccgactttgga
attgtgctcaacactgccacaaactcgttggcatattttggaaagaaaagatggatcgaa
aaacgtcttcgcctccgattgatgaaaaaagaagaaaaacgaaacgcaaaagccacccta
acagtgcagggaagctcgttgaactcctcgatgaagaagtcactgcctccgaaaattggg
ttgccacacccgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCCGAGCCAACAGTCTTTCGAT 91 169 718 Antisense
GTCTTTCGATCTTCGTTTGCCAAGT 87 467 733 Antisense
GGCCGGTATCGATTATTCTTGTCCT 382 541 794 Antisense
AAGTCGGTCGGTAGTTCTCAGCGAA 486 157 891 Antisense
TGCCGATCTTCTTCGACGTATACGA 587 585 986 Antisense
AATGGTGCGAGTATCCGACTTTGGA 617 161 1053 Antisense
CGTCTTCGCCTCCGATTGATGAAAA 144 247 1141 Antisense
GAAACGCAAAAGCCACCCTAACAGT 686 355 1178 Antisense
AAGCTCGTTGAACTCCTCGATGAAG 472 149 1209 Antisense
GAAGTCACTGCCTCCGAAAATTGGG 589 335 1233 Antisense
GAAAATTGGGTTGCCACACCCGTTG 360 287 1248 Antisense
Sequence Source Affymetrix Proprietary Database