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[179734_at]

Description F19C7.6 /REP_DB=WormBase Gene ID /WP=CE04420 /TR=Q19586 /GB=AAA83505.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 4.6
(-3)
A 		5.6
(-2.8)
A 		14.8
(-1.3)
A 		39.7
(3)
A 		35
B 2.3
(-1.2)
A 		1.8
(-3)
A 		3.4
(2.6)
A 		3.5
(3)
A 		2
C 7.2
(-1.6)
A 		6.1
(-1.9)
A 		2.9
(-3)
A 		21.1
(3)
A 		18
avr 4.7
(-2.9) 		4.5
(-3) 		7
(-2.1) 		21.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.6
(-2.8)
A 		7.8
(-2)
A 		2.4
(-3)
A 		2.9
(-2.9)
A 		33.4
(3)
A 		3.2
(-2.8)
A 		31
B 2
(-3)
A 		6
(-2)
A 		3.6
(-2.6)
A 		4.3
(-2.4)
A 		10.1
(-1)
A 		26.4
(3)
A 		24
C 13
(3)
A 		9.7
(1)
A 		2.9
(-3)
A 		4.1
(-2.3)
A 		11.4
(2)
A 		3.2
(-2.8)
A 		10
avr 6.2
(-1.7) 		7.8
(-1.1) 		3
(-3) 		3.8
(-2.7) 		18.3
(3) 		10.9
(0.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.7
(-2.3)
A 		1.2
(-3)
A 		3.9
(0.5)
A 		5.8
(3)
A 		5
B 0.7
(1.5)
A 		0.4
(-3)
A 		0.8
(3)
A 		0.7
(1.5)
A 		0
C 2.4
(0.2)
A 		1.8
(-1.2)
A 		1
(-3)
A 		3.6
(3)
A 		3
avr 1.6
(-1.7) 		1.1
(-3) 		1.9
(-0.9) 		3.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.7
(-2.9)
A 		2.8
(-1.6)
A 		0.5
(-3)
A 		0.7
(-2.9)
A 		10.1
(3)
A 		0.8
(-2.8)
A 		10
B 0.7
(-3)
A 		2
(-2.1)
A 		0.9
(-2.9)
A 		1.1
(-2.7)
A 		4.1
(-0.8)
A 		9.8
(3)
A 		9
C 4.8
(3)
A 		3
(0.4)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		3.7
(1.4)
A 		1.1
(-2.4)
A 		4
avr 2.1
(-1.4) 		2.6
(-0.8) 		0.7
(-3) 		0.9
(-2.8) 		6
(3) 		3.9
(0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10473
Sequence Type Exemplar sequence
Representative Public ID F19C7.6 NCBI
Target Description F19C7.6 /REP_DB=WormBase Gene ID /WP=CE04420 /TR=Q19586 /GB=AAA83505.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068191 NCBI Caenorhabditis elegans F19C7.6 (F19C7.6) mRNA, complete cds. 11/11 None
F19C7.6 ENSEMBL cdna:known chromosome:CEL140:IV:4595043:4595521:1 gene:F19C7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030508 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4595048-4595527(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19C7.6
Entrez Gene 184682 Entrez gene
SwissProt Q19586 EMBL-EBI
WormBase CE04420 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83505 Hypothetical protein F19C7.6 [Caenorhabditis elegans] ref|NP_500592.1| F19C7.6 [Caenorhabditis elegans] 1.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500592.1 2 53-75,99-121
F19C7.6 2 53-75,99-121
Sequence
Target Sequence 
>C. ELEGANS:179734_AT
atcagtgtttctttccgatggagcttgaagaagtccccaatcacaatgaggcgaggccga
caatgattcaatctaatcaaacaaagatgcatccaatactgatctggatccagatcatat
acaaatttttgatgagctctgcggtgtttgtgggactgttttctacaattgttcaactta
ttgttggaatattatcaattatcaaatggtctagcttagaaattaataatggaaagagaa
aatactccatagtggtttttcgtaacaagctgctcattcaaggagtgtccacgtgtgtct
caactattgtgttctggctagttgtcttgatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGTGTTTCTTTCCGATGGAGCT 565 29 35 Antisense
GGAGCTTGAAGAAGTCCCCAATCAC 116 521 54 Antisense
GTCCCCAATCACAATGAGGCGAGGC 89 477 67 Antisense
GAGGCGAGGCCGACAATGATTCAAT 155 403 82 Antisense
GCATCCAATACTGATCTGGATCCAG 508 309 123 Antisense
TGATGAGCTCTGCGGTGTTTGTGGG 223 567 164 Antisense
GGGACTGTTTTCTACAATTGTTCAA 415 495 186 Antisense
GTTTTTCGTAACAAGCTGCTCATTC 475 449 289 Antisense
TCAAGGAGTGTCCACGTGTGTCTCA 180 633 312 Antisense
GTGTCTCAACTATTGTGTTCTGGCT 224 487 329 Antisense
GTGTTCTGGCTAGTTGTCTTGATAT 621 485 343 Antisense
Sequence Source Affymetrix Proprietary Database