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[179733_s_at]

Description K11G9.5 /REP_DB=WormBase Gene ID /WP=CE07378 /TR=Q23012 /GB=AAB04978.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 84      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 83      6grp_total > 75      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 501
1 2 3 4 range
A 165.3
(-3)
P 		237.9
(-1.9)
P 		290.3
(-1.1)
P 		567.7
(3)
P 		402
B 122.1
(-3)
P 		287.2
(-1)
P 		324.3
(-0.6)
P 		622.8
(3)
P 		501
C 138.2
(-3)
P 		296
(-1)
P 		365.8
(-0.2)
P 		618.1
(3)
P 		480
avr 141.9
(-3) 		273.7
(-1.3) 		326.8
(-0.6) 		602.9
(3) 		461

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 426.1
(-2.5)
P 		396.5
(-3)
P 		464.5
(-1.8)
P 		562.9
(-0.1)
P 		471.4
(-1.7)
P 		739.2
(3)
P 		343
B 391.7
(-1.8)
P 		328.1
(-3)
P 		636.1
(3)
P 		522.1
(0.8)
P 		370
(-2.2)
P 		566.2
(1.6)
P 		308
C 467.1
(-0.7)
P 		335.8
(-3)
P 		557.9
(1)
P 		612.2
(1.9)
P 		478.9
(-0.4)
P 		672.4
(3)
P 		337
avr 428.3
(-1.5) 		353.5
(-3) 		552.8
(0.9) 		565.7
(1.2) 		440.1
(-1.3) 		659.3
(3) 		306
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 60.2
(-1.4)
P 		51.6
(-3)
P 		75.9
(1.6)
P 		83.1
(3)
P 		32
B 38.9
(-3)
P 		70.9
(-1)
P 		75.1
(-0.7)
P 		132.7
(3)
P 		94
C 45.8
(-3)
P 		85.1
(-0.1)
P 		127.5
(3)
P 		104.2
(1.3)
P 		82
avr 48.3
(-3) 		69.2
(-0.9) 		92.8
(1.6) 		106.7
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 78.5
(-3)
P 		141
(0.7)
P 		101.2
(-1.7)
P 		142.8
(0.8)
P 		142.2
(0.8)
P 		180
(3)
P 		102
B 136.3
(-1.4)
P 		109.2
(-3)
P 		154.5
(-0.3)
P 		138.3
(-1.3)
P 		150.3
(-0.6)
P 		211.1
(3)
P 		102
C 173.1
(0.5)
P 		102.5
(-3)
P 		142
(-1.1)
P 		123.1
(-2)
P 		155
(-0.4)
P 		225.1
(3)
P 		123
avr 129.3
(-2.2) 		117.6
(-3) 		132.6
(-2) 		134.7
(-1.8) 		149.2
(-0.8) 		205.4
(3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179733_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11909
Sequence Type Exemplar sequence
Representative Public ID K11G9.5 NCBI
Target Description K11G9.5 /REP_DB=WormBase Gene ID /WP=CE07378 /TR=Q23012 /GB=AAB04978.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072294 NCBI Caenorhabditis elegans K11G9.5 (K11G9.5) mRNA, complete cds. 11/11 None
K11G9.5 ENSEMBL cdna:known chromosome:CEL140:V:6688412:6691079:-1 gene:K11G9.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025346 5/11 Cross Hyb Matching Probes None
GENEFINDER00000025350 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6688639-6691080(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K11G9.5
Entrez Gene 179059 Entrez gene
SwissProt Q23012 EMBL-EBI
WormBase CE30094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04978 Hypothetical protein K11G9.5 [Caenorhabditis elegans] ref|NP_504695.2| K11G9.5 [Caenorhabditis elegans] 0.0
blast CAE71931 Hypothetical protein CBG18995 [Caenorhabditis briggsae] 0.0
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 1.0E-133
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504695.2 12 13-35,67-89,96-118,128-147,154-176,186-205,247-269,284-306,318-340,344-366,379-401,411-433
K11G9.5 12 13-35,67-89,96-118,128-147,154-176,186-205,247-269,284-306,318-340,344-366,379-401,411-433
Sequence
Target Sequence 
>C. ELEGANS:179733_S_AT
gctcaaactggattccttcttgcactttcagtattcattccacttccattaaaacttgtt
ggtggaattatcagtgacaaggcgaaatgtttctcggaacgcggaaaaatgttgttcttc
aatacgatttcagtaggactcgttggtgtcttgctaggatgtcttgggttcattcctcaa
tcgttgcactatgtttcagttgttcttttttccgtgatcttttcatgtttatgtctgaac
gtggcaggattctacaaatgtgcgacattacacactagacaattcgctcacgtcgttatt
tctacaattcaatggatgaaatcagtggcgctaatcactggaccagctctagttgcagct
attgtaaaaaatgaagaaagtgttggtcagtggagaacagttttgtgcattcttggaggt
attatgtttgtggtgagtttcagcaataaatattttgaaaataatgacattcaaaaaaag
ttgacaatagcaaacatccttgctctttgtgtgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAAACTGGATTCCTTCTTGCAC 82 301 856 Antisense
GCACTTTCAGTATTCATTCCACTTC 685 315 877 Antisense
CTCGTTGGTGTCTTGCTAGGATGTC 450 233 994 Antisense
AGGATGTCTTGGGTTCATTCCTCAA 382 57 1011 Antisense
TTCATTCCTCAATCGTTGCACTATG 634 687 1024 Antisense
GTTGCACTATGTTTCAGTTGTTCTT 221 439 1038 Antisense
TGTTCTTTTTTCCGTGATCTTTTCA 26 563 1056 Antisense
ATTACACACTAGACAATTCGCTCAC 76 13 1122 Antisense
ATTCGCTCACGTCGTTATTTCTACA 569 9 1137 Antisense
AGTGGCGCTAATCACTGGACCAGCT 320 59 1179 Antisense
CAAACATCCTTGCTCTTTGTGTGTT 433 191 1346 Antisense
Sequence Source Affymetrix Proprietary Database