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[179730_at]

Description F19C7.1 /REP_DB=WormBase Gene ID /WP=CE04415 /TR=Q19591 /GB=AAA83510.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 23      6grp_total > 33      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3492
1 2 3 4 range
A 3595.4
(1.7)
P 		3695
(1.9)
P 		4168.4
(3)
P 		1476.4
(-3)
P 		2692
B 3914.2
(2.1)
P 		3432.5
(1.2)
P 		4389
(3)
P 		1207.9
(-3)
P 		3181
C 3212.8
(1.5)
P 		3966.6
(3)
P 		3542
(2.2)
P 		897.1
(-3)
P 		3070
avr 3574.1
(2) 		3698
(2.3) 		4033.1
(3) 		1193.8
(-3) 		2839

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2904
1 2 3 4 5 6 range
A 2978.7
(2.1)
P 		3235.8
(3)
P 		2692.1
(1)
P 		2725.6
(1.1)
P 		1583.9
(-3)
P 		1612.2
(-2.9)
P 		1652
B 2616.6
(3)
P 		2106.1
(0.9)
P 		2455.3
(2.3)
P 		2295.8
(1.7)
P 		1668.5
(-0.8)
P 		1139
(-3)
P 		1478
C 3811
(2.6)
P 		1762.5
(-1.7)
P 		4018.3
(3)
P 		2096.9
(-1)
P 		2442.6
(-0.3)
P 		1114.5
(-3)
P 		2904
avr 3135.4
(3) 		2368.1
(0.5) 		3055.2
(2.7) 		2372.8
(0.5) 		1898.3
(-1) 		1288.6
(-3) 		1847
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1158
1 2 3 4 range
A 1309.1
(3)
P 		802.1
(0.2)
P 		1089.7
(1.8)
P 		216.1
(-3)
P 		1093
B 1248.2
(3)
P 		847.7
(0.6)
P 		1017
(1.6)
P 		257.4
(-3)
P 		991
C 1063.5
(2.1)
P 		1140.4
(2.5)
P 		1234.5
(3)
P 		151.3
(-3)
P 		1083
avr 1206.9
(3) 		930.1
(1.3) 		1113.7
(2.4) 		208.3
(-3) 		999

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1040
1 2 3 4 5 6 range
A 549.1
(-1.8)
P 		1150.8
(3)
P 		586.3
(-1.5)
P 		691.3
(-0.6)
P 		478
(-2.3)
P 		392.5
(-3)
P 		758
B 910.5
(3)
P 		701
(0.4)
P 		596.2
(-0.9)
P 		608.1
(-0.7)
P 		677.9
(0.1)
P 		424.7
(-3)
P 		486
C 1412.6
(3)
P 		537.8
(-2)
P 		1022.7
(0.7)
P 		421.7
(-2.7)
P 		790.4
(-0.6)
P 		373.1
(-3)
P 		1040
avr 957.4
(3) 		796.5
(1.3) 		735.1
(0.6) 		573.7
(-1.1) 		648.8
(-0.3) 		396.8
(-3) 		561
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10436
Sequence Type Exemplar sequence
Representative Public ID F19C7.1 NCBI
Target Description F19C7.1 /REP_DB=WormBase Gene ID /WP=CE04415 /TR=Q19591 /GB=AAA83510.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068196 NCBI Caenorhabditis elegans F19C7.1 (F19C7.1) mRNA, complete cds. 11/11 A 
SNAP00000030499 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4603098:4608081:1 11/11 None
GENEFINDER00000030504 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4605881:4608201:1 11/11 None
F19C7.1 ENSEMBL cdna:known chromosome:CEL140:IV:4605794:4608182:1 gene:F19C7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4605886-4608087(+) 99.63 100.0
Public Domain and Genome References
Gene Title
Ensembl F19C7.1
Entrez Gene 177224 Entrez gene
SwissProt Q19591 EMBL-EBI
WormBase CE04415 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83509 Hypothetical protein F19C7.4 [Caenorhabditis elegans] ref|NP_500596.2| F19C7.4 [Caenorhabditis elegans] 0.0
blast AAA83508 Hypothetical protein F19C7.2 [Caenorhabditis elegans] ref|NP_500595.1| F19C7.2 [Caenorhabditis elegans] 0.0
blast CAE58551 Hypothetical protein CBG01710 [Caenorhabditis briggsae] 0.0
blast AAA83510 Hypothetical protein F19C7.1 [Caenorhabditis elegans] ref|NP_500597.1| F19C7.1 [Caenorhabditis elegans] 1.0E-159
blast CAE58552 Hypothetical protein CBG01711 [Caenorhabditis briggsae] 1.0E-132
blast CAB05250 Hypothetical protein LLC1.2 [Caenorhabditis elegans] ref|NP_502752.1| LLC1.2 [Caenorhabditis elegans] 8.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 6.3E-64
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 6.3E-64
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:179730_AT
tcgtctccccatatgtcattgactcatgggtcaatgtttgcaacggttacgctgcctttt
acggatgccttggacaagctcaaatccgcaattgcctcggaaccgtcggactcgtcggat
ctggactcgatcttaacaccgcctacgcttaccaaggattcttggccgactgggatttca
agtgtggagccggattctggactatgtacgagcgtaagaccctgaccacttgcgtcgaga
gcacctacgtcaactaccaacaagagacatctgccgctatgaatacctacatgactgcca
ccgctcaagacccaaatggtgcttgcaagtatgctcagaatctcatgaacgcgtggcaga
acacctacaccaagggaccatgccgtacagttatgccagctcaagccggatggttcggat
gccaatcggctcgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCTCCCCATATGTCATTGACTC 249 603 194 Antisense
ATGTTTGCAACGGTTACGCTGCCTT 522 45 227 Antisense
CTGCCTTTTACGGATGCCTTGGACA 206 237 245 Antisense
CAAGCTCAAATCCGCAATTGCCTCG 462 185 268 Antisense
AGGATTCTTGGCCGACTGGGATTTC 200 55 348 Antisense
GTGTGGAGCCGGATTCTGGACTATG 35 489 375 Antisense
TTGCGTCGAGAGCACCTACGTCAAC 243 701 423 Antisense
GACATCTGCCGCTATGAATACCTAC 590 369 459 Antisense
ACCATGCCGTACAGTTATGCCAGCT 138 87 570 Antisense
TATGCCAGCTCAAGCCGGATGGTTC 329 655 585 Antisense
GTTCGGATGCCAATCGGCTCGTGAA 179 441 606 Antisense
Sequence Source Affymetrix Proprietary Database