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[179729_at]

Description K07E8.8 /REP_DB=WormBase Gene ID /WP=CE11900 /TR=O16688 /GB=AAB66152.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 29.9
(3)
A 		3.8
(-2.7)
A 		2.4
(-3)
A 		4.7
(-2.5)
A 		28
B 5.1
(-0.8)
A 		3.9
(-3)
A 		7.2
(3)
A 		6
(0.8)
A 		3
C 17.1
(-1.2)
A 		2.1
(-3)
A 		3
(-2.9)
A 		53.1
(3)
A 		51
avr 17.4
(1.7) 		3.3
(-3) 		4.2
(-2.7) 		21.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.5
(3)
A 		6.1
(1.5)
A 		2
(-3)
A 		2.9
(-2)
A 		3.3
(-1.6)
A 		4.4
(-0.4)
A 		6
B 18.3
(3)
A 		1.6
(-2.9)
A 		6
(-1.3)
A 		3
(-2.4)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		17
C 1
(-3)
A 		18.2
(3)
A 		15.2
(2)
A 		1.7
(-2.8)
A 		4
(-2)
A 		2.8
(-2.4)
A 		17
avr 8.9
(3) 		8.6
(2.7) 		7.7
(1.9) 		2.5
(-3) 		2.9
(-2.6) 		2.8
(-2.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.9
(3)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		10
B 1.6
(2.1)
A 		1
(-3)
A 		1.7
(3)
A 		1.3
(-0.4)
A 		1
C 5.7
(0.6)
A 		0.6
(-3)
A 		1
(-2.7)
A 		9
(3)
A 		8
avr 6.1
(3) 		0.8
(-3) 		1.1
(-2.7) 		3.7
(0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.4
(0.3)
A 		2.2
(3)
A 		0.4
(-3)
A 		0.7
(-2)
A 		1
(-1)
A 		1.1
(-0.7)
A 		2
B 6.4
(3)
A 		0.5
(-3)
A 		1.4
(-2.1)
A 		0.8
(-2.7)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		6
C 0.4
(-2.9)
A 		5.5
(3)
A 		3.9
(1.2)
A 		0.3
(-3)
A 		1.3
(-1.8)
A 		0.9
(-2.3)
A 		5
avr 2.7
(3) 		2.7
(3) 		1.9
(0.7) 		0.6
(-3) 		1
(-1.9) 		0.8
(-2.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5918
Sequence Type Exemplar sequence
Representative Public ID K07E8.8 NCBI
Target Description K07E8.8 /REP_DB=WormBase Gene ID /WP=CE11900 /TR=O16688 /GB=AAB66152.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K07E8.8 ENSEMBL cdna:pseudogene chromosome:CEL140:II:655810:656445:-1 gene:K07E8.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018461 8/11 Cross Hyb Matching Probes None
GENEFINDER00000018463 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:655809-656445(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07E8.8
Sequence
Target Sequence 
>C. ELEGANS:179729_AT
ttcctggtgcctcgtagaaaaacctacttgcagagcaagcaaaaaatacttgaagttatc
gattttctcgcttttaaatataatgagcaacaacacagcgttattaagcaccatgaaatc
acattgaaactcattgcacgggctactctcaagaaggtagtgctgggctccccggcaaag
cgatcggcggtgctgtggatcaacgacgaggagcacaacttcaagttcggtttggttact
gttgccaaactacagatatatttgctccattttcaaggcatttgtgaagtttggaagctg
agtgaatttgaatttcagaacgctttgaaaaaagtcctgctggccaaactggccaaaact
ccaagcctagatgttttattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTGGTGCCTCGTAGAAAAACCT 137 697 37 Antisense
GAAGTTATCGATTTTCTCGCTTTTA 645 335 88 Antisense
AACACAGCGTTATTAAGCACCATGA 188 135 128 Antisense
TGAAACTCATTGCACGGGCTACTCT 70 569 161 Antisense
GAGCACAACTTCAAGTTCGGTTTGG 347 389 247 Antisense
TTGGTTACTGTTGCCAAACTACAGA 26 697 268 Antisense
AACTACAGATATATTTGCTCCATTT 222 141 284 Antisense
TTTGCTCCATTTTCAAGGCATTTGT 322 669 297 Antisense
GAAAAAAGTCCTGCTGGCCAAACTG 423 351 363 Antisense
GGCCAAACTGGCCAAAACTCCAAGC 502 543 378 Antisense
AACTCCAAGCCTAGATGTTTTATTT 153 143 393 Antisense
Sequence Source Affymetrix Proprietary Database