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[179728_at]

Description C08E3.8 /REP_DB=WormBase Gene ID /WP=CE08011 /TR=O17199 /GB=AAB70967.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 11      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 45.8
(-1.5)
A 		28.5
(-2.2)
A 		10.2
(-3)
A 		152.8
(3)
A 		143
B 40.1
(-3)
A 		45.4
(-1.2)
A 		51.8
(0.9)
A 		58.2
(3)
A 		18
C 36.1
(-0.9)
A 		51.1
(3)
A 		33.4
(-1.6)
A 		28
(-3)
A 		23
avr 40.7
(-1.9) 		41.7
(-1.8) 		31.8
(-3) 		79.7
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 77.4
(-2.9)
A 		66.8
(-3)
A 		185.8
(-1.6)
P 		587.4
(3)
P 		296
(-0.4)
P 		65.5
(-3)
A 		522
B 74.9
(-2.8)
A 		61.2
(-3)
A 		172.8
(-1)
P 		392.3
(3)
P 		295.2
(1.2)
P 		98.8
(-2.3)
P 		331
C 49.7
(-3)
A 		77.3
(-2.6)
A 		204.9
(-0.8)
P 		474
(3)
P 		344.2
(1.2)
P 		99.6
(-2.3)
P 		424
avr 67.3
(-3) 		68.4
(-3) 		187.8
(-1.3) 		484.6
(3) 		311.8
(0.5) 		88
(-2.7) 		417
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16.7
(1.3)
A 		6.2
(-1.9)
A 		2.7
(-3)
A 		22.4
(3)
A 		20
B 12.8
(3)
A 		11.2
(-3)
A 		12
(0)
A 		12.4
(1.5)
A 		2
C 11.9
(1.3)
A 		14.7
(3)
A 		11.6
(1.1)
A 		4.7
(-3)
A 		10
avr 13.8
(3) 		10.7
(-0.7) 		8.8
(-3) 		13.2
(2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 14.3
(-3)
A 		23.8
(-2.6)
A 		40.5
(-1.8)
P 		149
(3)
P 		89.3
(0.3)
P 		15.9
(-2.9)
A 		135
B 26.1
(-2.7)
A 		20.4
(-3)
A 		42
(-1.7)
P 		103.9
(2)
P 		119.9
(3)
P 		36.8
(-2)
P 		100
C 18.4
(-3)
A 		23.6
(-2.7)
A 		52.2
(-0.8)
P 		95.3
(2)
P 		111.4
(3)
P 		33.4
(-2)
P 		93
avr 19.6
(-3) 		22.6
(-2.8) 		44.9
(-1.4) 		116.1
(3) 		106.9
(2.4) 		28.7
(-2.4) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179728_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5441
Sequence Type Exemplar sequence
Representative Public ID C08E3.8 NCBI
Target Description C08E3.8 /REP_DB=WormBase Gene ID /WP=CE08011 /TR=O17199 /GB=AAB70967.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061612(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061612 NCBI Caenorhabditis elegans C08E3.8 (C08E3.8) mRNA, complete cds. 11/11 None
SNAP00000042050 ENSEMBL cdna:SNAP chromosome:CEL140:II:1614797:1616467:-1 11/11 None
GENEFINDER00000042060 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1614797:1616467:-1 11/11 None
C08E3.8 ENSEMBL cdna:known chromosome:CEL140:II:1614797:1616467:-1 gene:C08E3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1614795-1616466(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.8
Entrez Gene 182400 Entrez gene
SwissProt O17199 EMBL-EBI
WormBase CE08011 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70967 Hypothetical protein C08E3.8 [Caenorhabditis elegans] ref|NP_494013.1| C08E3.8 [Caenorhabditis elegans] 0.0
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 1.0E-93
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 9.0E-93
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 6.0E-92
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 2.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.4E-38
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.4E-38
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.4E-38
Sequence
Target Sequence 
>C. ELEGANS:179728_AT
gaaccgtggaagcacactacaattcattagcagaaattgcccaactcttgcccattttcc
atgctggaaaactggaagaaattaatttcaaacaaggggccaggactgatggatatgagc
agctggttggcctggaacaatggaagaacgctagaaaatttgatggattttggagcttga
acgttccaattgagcactgtttgcatttcgagtgcttcaaagatcatttcgtaagattca
aagaagaagatgcaatgaagcttcgttatatgcttgatagatccactaactttggctatg
ctgaaatcaccatcgatccaatgaacgtcagtctattgaaaagggcctttgatgtgaaca
acgacaataagttcgaattcgtctaccaatctccggacaacgggtctttcgaagttcatt
gtgctcttcgagtgctatatatcactaagtctggctacaaatttaaatacaacaacaaga
gtgccagcaccttctataagccacccccgatcccagcccctccggcgctttttttgaggg
attatcaattcttcgatccccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCGTGGAAGCACACTACAATTC 283 345 704 Antisense
TAGCAGAAATTGCCCAACTCTTGCC 539 651 731 Antisense
GATCCACTAACTTTGGCTATGCTGA 245 415 983 Antisense
CTGAAATCACCATCGATCCAATGAA 158 239 1004 Antisense
AAGTTCGAATTCGTCTACCAATCTC 237 157 1072 Antisense
CAATCTCCGGACAACGGGTCTTTCG 401 181 1090 Antisense
GGGTCTTTCGAAGTTCATTGTGCTC 565 495 1105 Antisense
GTTCATTGTGCTCTTCGAGTGCTAT 106 445 1117 Antisense
AAGAGTGCCAGCACCTTCTATAAGC 549 153 1180 Antisense
TCCGGCGCTTTTTTTGAGGGATTAT 355 587 1224 Antisense
GGATTATCAATTCTTCGATCCCCGT 502 509 1242 Antisense
Sequence Source Affymetrix Proprietary Database