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[179727_at]

Description Y43C5A.3 /REP_DB=WormBase Gene ID /WP=CE19152 /TR=Q9XXF1 /GB=CAA19503.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 10      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 04      6grp_total > 03      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3405
1 2 3 4 range
A 3779.7
(3)
P 		983.6
(-2)
P 		453
(-3)
P 		2251.5
(0.2)
P 		3327
B 3858.3
(3)
P 		880.7
(-2.3)
P 		476.6
(-3)
P 		2175.3
(0)
P 		3382
C 3675.3
(3)
P 		828.5
(-2.5)
P 		569.6
(-3)
P 		2223.3
(0.2)
P 		3106
avr 3771.1
(3) 		897.6
(-2.3) 		499.7
(-3) 		2216.7
(0.1) 		3271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5889
1 2 3 4 5 6 range
A 6250.7
(3)
P 		4837.7
(1.5)
P 		5245.7
(2)
P 		5815.4
(2.5)
P 		4245
(0.9)
P 		475.2
(-3)
P 		5776
B 6364.4
(3)
P 		4838.4
(1.4)
P 		4055.8
(0.6)
P 		5266.7
(1.9)
P 		4327
(0.9)
P 		555.6
(-3)
P 		5809
C 5627.1
(3)
P 		4621.7
(1.8)
P 		4177.3
(1.3)
P 		5135.9
(2.4)
P 		4183.5
(1.3)
P 		522.9
(-3)
P 		5104
avr 6080.7
(3) 		4765.9
(1.6) 		4492.9
(1.3) 		5406
(2.3) 		4251.8
(1) 		517.9
(-3) 		5563
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1266
1 2 3 4 range
A 1376.2
(3)
P 		213.5
(-2.5)
P 		118.4
(-3)
P 		329.6
(-2)
P 		1258
B 1230.4
(3)
P 		217.5
(-2.4)
P 		110.4
(-3)
P 		463.6
(-1.1)
P 		1120
C 1216.6
(3)
P 		238.2
(-2.8)
P 		198.5
(-3)
P 		374.9
(-2)
P 		1018
avr 1274.4
(3) 		223.1
(-2.6) 		142.4
(-3) 		389.4
(-1.7) 		1132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2099
1 2 3 4 5 6 range
A 1152.3
(0.9)
P 		1720.5
(3)
P 		1142.4
(0.8)
P 		1474.9
(2.1)
P 		1281
(1.4)
P 		115.7
(-3)
P 		1605
B 2214.5
(3)
P 		1610.5
(1.2)
P 		984.9
(-0.7)
P 		1395
(0.6)
P 		1758
(1.6)
P 		207.2
(-3)
P 		2007
C 2085.7
(3)
P 		1410.2
(0.9)
P 		1063.2
(-0.2)
P 		1032.8
(-0.3)
P 		1353.7
(0.7)
P 		175.1
(-3)
P 		1911
avr 1817.5
(3) 		1580.4
(2.1) 		1063.5
(0.3) 		1300.9
(1.1) 		1464.2
(1.7) 		166
(-3) 		1652
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179727_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10098
Sequence Type Exemplar sequence
Representative Public ID Y43C5A.3 NCBI
Target Description Y43C5A.3 /REP_DB=WormBase Gene ID /WP=CE19152 /TR=Q9XXF1 /GB=CAA19503.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069483 NCBI Caenorhabditis elegans Y43C5A.3 (Y43C5A.3) mRNA, complete cds. 11/11 None
SNAP00000044401 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10274067:10275049:1 11/11 None
GENEFINDER00000044412 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10274067:10275049:1 11/11 None
Y43C5A.3 ENSEMBL cdna:known chromosome:CEL140:IV:10274041:10275374:1 gene:Y43C5A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10274072-10275055(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43C5A.3
Entrez Gene 189848 Entrez gene
SwissProt Q9XXF1 EMBL-EBI
WormBase CE19152 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19503 Hypothetical protein Y43C5A.3 [Caenorhabditis elegans] ref|NP_501884.1| Y43C5A.3 [Caenorhabditis elegans] 2.0E-17
blast CAE60730 Hypothetical protein CBG04410 [Caenorhabditis briggsae] 6.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501884.1 2 3-25,63-85
Y43C5A.3 2 3-25,63-85
SNAP00000044401 2 3-25,63-85
GENEFINDER00000044412 2 3-25,63-85
Sequence
Target Sequence 
>C. ELEGANS:179727_AT
gcgcgtgatcttaatttcgattctgattattgttgccttctgtattcatacagcagatgc
acaatatggatactacagcccatattatggtggaggatatggtaactatggaggatatgg
caactattacccgagctattcttcctattcttactatccaagttatggatacaataacta
tggatatggaaactatggaggatatggtggatacaataactatggctacaactcatttgg
cttctgtggaattcgttgccgtcgattccagcgtcgtttgatgtgggctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCGTGATCTTAATTTCGATTCTG 37 289 15 Antisense
GATTCTGATTATTGTTGCCTTCTGT 8 433 33 Antisense
TATTGTTGCCTTCTGTATTCATACA 10 667 42 Antisense
TGGATACTACAGCCCATATTATGGT 351 549 81 Antisense
GGAGGATATGGCAACTATTACCCGA 98 517 124 Antisense
CAACTATTACCCGAGCTATTCTTCC 316 189 135 Antisense
TCTTCCTATTCTTACTATCCAAGTT 635 617 154 Antisense
GGCTACAACTCATTTGGCTTCTGTG 113 539 238 Antisense
GGCTTCTGTGGAATTCGTTGCCGTC 608 537 253 Antisense
CGTCGATTCCAGCGTCGTTTGATGT 45 247 274 Antisense
TCCAGCGTCGTTTGATGTGGGCTCA 430 587 281 Antisense
Sequence Source Affymetrix Proprietary Database