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[179726_at]

Description F57A10.4 /REP_DB=WormBase Gene ID /WP=CE16150 /TR=O17897 /GB=CAB09421.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 38.4
(-3)
A 		71.7
(-1.7)
A 		73.8
(-1.6)
A 		189.3
(3)
A 		151
B 63.3
(-2.8)
A 		60.2
(-3)
A 		95.3
(-0.6)
A 		147.1
(3)
A 		87
C 29
(-3)
A 		40.3
(-2.5)
A 		67
(-1.4)
A 		171.6
(3)
A 		143
avr 43.6
(-3) 		57.4
(-2.3) 		78.7
(-1.3) 		169.3
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 424
1 2 3 4 5 6 range
A 21.8
(-2.8)
A 		11.2
(-3)
A 		136
(-0.3)
A 		112.7
(-0.8)
A 		244.7
(2.1)
P 		285.8
(3)
P 		275
B 42.5
(-2.7)
A 		21.4
(-3)
A 		52.3
(-2.5)
A 		116.5
(-1.4)
A 		280
(1.3)
P 		384.1
(3)
P 		363
C 9.9
(-3)
A 		59
(-2.3)
A 		28.7
(-2.7)
A 		150.5
(-1)
A 		183.4
(-0.5)
P 		434.3
(3)
P 		424
avr 24.7
(-3) 		30.5
(-2.9) 		72.3
(-2.2) 		126.6
(-1.2) 		236
(0.7) 		368.1
(3) 		343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14
(-3)
A 		15.6
(-2.3)
A 		19.3
(-0.7)
A 		27.7
(3)
A 		14
B 20.2
(-1.1)
A 		14.9
(-3)
A 		22.1
(-0.4)
A 		31.4
(3)
A 		17
C 9.6
(-3)
A 		11.6
(-2.4)
A 		23.4
(1.3)
A 		28.9
(3)
A 		19
avr 14.6
(-2.8) 		14
(-3) 		21.6
(-0) 		29.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 4
(-3)
A 		4
(-3)
A 		29.6
(-0.8)
A 		28.6
(-0.9)
A 		73.9
(3)
P 		69.6
(2.6)
P 		70
B 14.8
(-2.7)
A 		7.1
(-3)
A 		12.7
(-2.8)
A 		30.8
(-2)
A 		113.8
(1.7)
P 		143.2
(3)
P 		136
C 3.7
(-3)
A 		18
(-2.4)
A 		7.3
(-2.8)
A 		30.3
(-1.9)
A 		59.3
(-0.6)
P 		145.4
(3)
P 		142
avr 7.5
(-3) 		9.7
(-2.9) 		16.5
(-2.5) 		29.9
(-1.8) 		82.3
(1) 		119.4
(3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179726_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12612
Sequence Type Exemplar sequence
Representative Public ID F57A10.4 NCBI
Target Description F57A10.4 /REP_DB=WormBase Gene ID /WP=CE16150 /TR=O17897 /GB=CAB09421.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074528 NCBI Caenorhabditis elegans F57A10.4 (F57A10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000005229 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15772024:15772827:1 11/11 None
F57A10.4 ENSEMBL cdna:known chromosome:CEL140:V:15772024:15772886:1 gene:F57A10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005221 3/11 Cross Hyb Matching Probes None
SNAP00000005222 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15772023-15772827(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57A10.4
Entrez Gene 180058 Entrez gene
SwissProt O17897 EMBL-EBI
WormBase CE16150 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB09421 Hypothetical protein F57A10.4 [Caenorhabditis elegans] ref|NP_506929.1| F57A10.4 [Caenorhabditis elegans] 1.0E-107
blast CAE56412 Hypothetical protein CBG24103 [Caenorhabditis briggsae] 2.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506929.1 2 7-29,144-166
F57A10.4 2 7-29,144-166
GENEFINDER00000005229 2 7-29,144-166
Sequence
Target Sequence 
>C. ELEGANS:179726_AT
tcggatacgcttttccctaataccagttggcgttgccctgattgctgtacttctgaaggc
atcaggatggactctttatcgaaagaatatggcgtttgaacgagtcgataagcagattca
aatggatattgaacggctttttctaaatacattgtcaaggcttgcggatttcaatatgga
cttgccggaaaaaatcacgattctaaaaatggaaaacgaagagggaaatacattcagcga
accgtttctcgtcggcaattcgtgggaagttcgcgcctatcattatgctggtgaaggact
ttcaaaatggtgctcaggattcgcttcgaggactactcgacagtattttgattacaaaaa
tcggcgaatcgatgtgacgttcgactgcaactccaaaaatgtttttcctcctcttcgaac
aatcatcggcgccgttctaactggaatgttcttcatcgcgacgcttttggttttcagatt
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGATACGCTTTTCCCTAATACCA 548 605 21 Antisense
AATACCAGTTGGCGTTGCCCTGATT 432 173 39 Antisense
GCCCTGATTGCTGTACTTCTGAAGG 248 283 55 Antisense
TACATTCAGCGAACCGTTTCTCGTC 265 645 249 Antisense
CCGTTTCTCGTCGGCAATTCGTGGG 187 265 262 Antisense
AGTTCGCGCCTATCATTATGCTGGT 3 65 288 Antisense
GGTGCTCAGGATTCGCTTCGAGGAC 157 501 329 Antisense
CGATGTGACGTTCGACTGCAACTCC 249 249 390 Antisense
TCCTCCTCTTCGAACAATCATCGGC 43 593 426 Antisense
AACTGGAATGTTCTTCATCGCGACG 353 143 459 Antisense
GCGACGCTTTTGGTTTTCAGATTGT 505 289 478 Antisense
Sequence Source Affymetrix Proprietary Database