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[179725_at]

Description F59H6.3 /REP_DB=WormBase Gene ID /WP=CE20909 /TR=Q9N5Q4 /GB=AAF39852.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 18.3
(-3)
A 		18
(-3)
A 		38.3
(-1.2)
A 		83.9
(3)
A 		66
B 28.3
(-2.2)
A 		30.6
(-1.8)
A 		24
(-3)
A 		56.5
(3)
P 		33
C 5.3
(-3)
A 		55.4
(3)
P 		25
(-0.6)
A 		49.7
(2.3)
A 		50
avr 17.3
(-3) 		34.7
(-0.7) 		29.1
(-1.5) 		63.4
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 56.8
(3)
A 		29.6
(-1.7)
A 		36.2
(-0.5)
A 		21.9
(-3)
A 		54.9
(2.7)
A 		37.8
(-0.3)
A 		35
B 8.9
(-3)
A 		35.7
(3)
P 		34.7
(2.8)
P 		8.7
(-3)
A 		33.2
(2.4)
M 		30.8
(1.9)
A 		27
C 16.2
(-3)
A 		54.2
(3)
A 		32.6
(-0.4)
A 		27.8
(-1.2)
A 		22.1
(-2.1)
A 		29.3
(-0.9)
A 		38
avr 27.3
(-0.7) 		39.8
(3) 		34.5
(1.4) 		19.5
(-3) 		36.7
(2.1) 		32.6
(0.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.6
(-1.1)
A 		3.9
(-3)
A 		10
(1.4)
A 		12.3
(3)
A 		8
B 9
(0.2)
A 		7.5
(-1.2)
A 		5.6
(-3)
A 		12
(3)
P 		6
C 1.8
(-3)
A 		15.9
(3)
P 		8.7
(-0.1)
A 		8.4
(-0.2)
A 		14
avr 5.8
(-3) 		9.1
(0.9) 		8.1
(-0.3) 		10.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 10.5
(-0.3)
A 		10.5
(-0.3)
A 		7.9
(-1.7)
A 		5.5
(-3)
A 		16.6
(3)
A 		9.2
(-1)
A 		11
B 3.1
(-2.6)
A 		11.9
(2.1)
P 		8.4
(0.3)
P 		2.3
(-3)
A 		13.5
(3)
M 		11.5
(1.9)
A 		11
C 6
(-2.8)
A 		16.5
(3)
A 		8.3
(-1.5)
A 		5.6
(-3)
A 		7.1
(-2.2)
A 		9.8
(-0.7)
A 		11
avr 6.5
(-1.6) 		13
(3) 		8.2
(-0.4) 		4.5
(-3) 		12.4
(2.6) 		10.2
(1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5512
Sequence Type Exemplar sequence
Representative Public ID F59H6.3 NCBI
Target Description F59H6.3 /REP_DB=WormBase Gene ID /WP=CE20909 /TR=Q9N5Q4 /GB=AAF39852.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061751
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002445 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2018022:2019467:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061751 5/11 Cross Hyb Matching Probes None
SNAP00000002424 5/11 Cross Hyb Matching Probes None
SNAP00000018563 5/11 Cross Hyb Matching Probes None
F59H6.3 5/11 Cross Hyb Matching Probes None
Y75B12A.1 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2018020-2019466(+) 89.36 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39852 Hypothetical protein F59H6.3 [Caenorhabditis elegans] ref|NP_494152.2| F59H6.3 [Caenorhabditis elegans] 7.0E-29
Sequence
Target Sequence 
>C. ELEGANS:179725_AT
accgagcaacagttaaattggccaaatcaggataatgtgatcgacgaggccccaccacca
aacacgcccacgtggactgtgctattcgtcaactggacgattattcatcaccggcttcaa
cgatcaccgactcctgccgcctcgtggcctcgaaacgtcttcttacccaactgttgccaa
cttctctcccagagtttgcacaagtcttatccaacttcaacatttttaacgcaagctgca
cgctcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGAGCAACAGTTAAATTGGCCAA 591 87 22 Antisense
AATTGGCCAAATCAGGATAATGTGA 542 171 37 Antisense
CCCACGTGGACTGTGCTATTCGTCA 104 257 88 Antisense
GGACTGTGCTATTCGTCAACTGGAC 131 525 95 Antisense
GTGCTATTCGTCAACTGGACGATTA 680 467 100 Antisense
CAACTTCTCTCCCAGAGTTTGCACA 295 189 199 Antisense
CTCTCCCAGAGTTTGCACAAGTCTT 611 231 205 Antisense
GTTTGCACAAGTCTTATCCAACTTC 444 451 215 Antisense
GTCTTATCCAACTTCAACATTTTTA 442 469 225 Antisense
ATCCAACTTCAACATTTTTAACGCA 310 41 230 Antisense
TTTTTAACGCAAGCTGCACGCTCGC 310 675 244 Antisense
Sequence Source Affymetrix Proprietary Database