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[179723_at]

Description C16D9.6 /REP_DB=WormBase Gene ID /WP=CE06842 /TR=Q22900 /GB=AAB18285.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 18      4grp_total > 30      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 176.3
(1.5)
P 		73.6
(-3)
P 		80.5
(-2.7)
P 		211.9
(3)
P 		138
B 249.5
(3)
P 		122.9
(-0.1)
A 		5.5
(-3)
A 		171.1
(1.1)
P 		244
C 271.3
(3)
P 		125.6
(-1.1)
P 		56
(-3)
P 		221.8
(1.6)
P 		215
avr 232.4
(3) 		107.4
(-1.1) 		47.3
(-3) 		201.6
(2) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 349.7
(3)
P 		191.5
(-1.5)
P 		247.7
(0.1)
P 		259.7
(0.4)
P 		195.8
(-1.4)
P 		140.6
(-3)
P 		209
B 521.6
(3)
P 		297.2
(-0.4)
P 		121.5
(-3)
P 		169.7
(-2.3)
P 		180.5
(-2.1)
P 		132.3
(-2.8)
P 		400
C 357.1
(3)
P 		240.6
(-1.1)
P 		201.4
(-2.5)
P 		198.5
(-2.6)
P 		187.6
(-3)
P 		244.1
(-1)
P 		170
avr 409.5
(3) 		243.1
(-1.2) 		190.2
(-2.5) 		209.3
(-2.1) 		188
(-2.6) 		172.3
(-3) 		237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 64.2
(3)
P 		16
(-3)
P 		21
(-2.4)
P 		31
(-1.1)
P 		48
B 79.6
(3)
P 		30.3
(-0.8)
A 		1.3
(-3)
A 		36.5
(-0.3)
P 		78
C 89.8
(3)
P 		36.1
(-1.6)
P 		19.5
(-3)
P 		37.4
(-1.5)
P 		70
avr 77.9
(3) 		27.5
(-1.7) 		13.9
(-3) 		35
(-1) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 64.5
(2.4)
P 		68.1
(3)
P 		53.9
(0.5)
P 		65.9
(2.6)
P 		59.1
(1.4)
P 		34.2
(-3)
P 		34
B 181.5
(3)
P 		98.9
(-0.3)
P 		29.5
(-3)
P 		44.9
(-2.4)
P 		73.3
(-1.3)
P 		49.4
(-2.2)
P 		152
C 132.4
(3)
P 		73.4
(-0.8)
P 		51.2
(-2.3)
P 		39.9
(-3)
P 		60.7
(-1.7)
P 		81.7
(-0.3)
P 		93
avr 126.1
(3) 		80.1
(-0.4) 		44.9
(-3) 		50.2
(-2.6) 		64.4
(-1.6) 		55.1
(-2.2) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11434
Sequence Type Exemplar sequence
Representative Public ID C16D9.6 NCBI
Target Description C16D9.6 /REP_DB=WormBase Gene ID /WP=CE06842 /TR=Q22900 /GB=AAB18285.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072725(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072725 NCBI Caenorhabditis elegans C16D9.6 (C16D9.6) mRNA, complete cds. 9/11 None
SNAP00000043378 ENSEMBL cdna:SNAP chromosome:CEL140:V:8250892:8252879:-1 9/11 None
GENEFINDER00000043389 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8250892:8252879:-1 9/11 None
C16D9.6 ENSEMBL cdna:known chromosome:CEL140:V:8250892:8252879:-1 gene:C16D9.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8250892-8252880(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16D9.6
Entrez Gene 182687 Entrez gene
SwissProt Q22900 EMBL-EBI
WormBase CE35240 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18285 Hypothetical protein C16D9.6 [Caenorhabditis elegans] ref|NP_505126.2| C16D9.6 [Caenorhabditis elegans] 0.0
blast CAE66096 Hypothetical protein CBG11315 [Caenorhabditis briggsae] 1.0E-160
blast CAE58569 Hypothetical protein CBG01734 [Caenorhabditis briggsae] 3.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505126.2 1 39-61
C16D9.6 1 39-61
SNAP00000043378 1 39-61
GENEFINDER00000043389 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:179723_AT
tcttcttgatcacagtctgcacggttttagaatagccttccagttctattggcagagttg
ttcaaaaattagaaattttttgaaaaaaaaagccgacgacgacacgtttgtcatcgtgga
aaacctgcgatctttcctgtcaacactgaatcccgacgagccacattatcttggatacgt
attgaagccatatctaaagaatggatacaatgcaggaggggctggttatattctttcaag
ggccgcattgaaaatattctcagagcagttgtactcaaatgccacgttgtgtccggatga
tatctatgaggatgttggaattgcaagatgtcttgcaaatgcaggaatgtatccagaaga
tactcgaaactctctcggacagaatcggttcaacacattctcgccttcggatacattcca
tcaaacaaaagctggcattgattgggtcaaattcaaagaaaataaaggttatgaagcatt
tgccaatgatctaatctcatttcacaagctttcaccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTTGATCACAGTCTGCACGGT 35 617 807 Antisense
ATAGCCTTCCAGTTCTATTGGCAGA 162 23 838 Antisense
GGAAAACCTGCGATCTTTCCTGTCA 583 527 924 Antisense
TCCTGTCAACACTGAATCCCGACGA 215 593 941 Antisense
TCCCGACGAGCCACATTATCTTGGA 525 597 957 Antisense
GGAGGGGCTGGTTATATTCTTTCAA 415 515 1021 Antisense
AAATGCCACGTTGTGTCCGGATGAT 290 119 1083 Antisense
GATACTCGAAACTCTCTCGGACAGA 633 421 1165 Antisense
AGAATCGGTTCAACACATTCTCGCC 606 75 1187 Antisense
TCGCCTTCGGATACATTCCATCAAA 709 597 1207 Antisense
TCTCATTTCACAAGCTTTCACCGGA 385 613 1301 Antisense
Sequence Source Affymetrix Proprietary Database