[Home] | [Total List]

[179721_at]

Description F40F4.1 /REP_DB=WormBase Gene ID /WP=CE04531 /TR=Q20225 /GB=AAA81436.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 2.3
(-2.5)
A 		5
(-1.3)
A 		1.2
(-3)
A 		15
(3)
A 		14
B 1.9
(-3)
A 		42.3
(3)
A 		2.1
(-3)
A 		10.7
(-1.7)
A 		40
C 10.7
(-1.4)
A 		26.9
(3)
P 		14
(-0.5)
A 		4.8
(-3)
A 		22
avr 5
(-3) 		24.7
(3) 		5.8
(-2.8) 		10.2
(-1.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 5.2
(-2.5)
A 		29
(3)
A 		11.1
(-1.2)
A 		3.2
(-3)
A 		8.9
(-1.7)
A 		18.4
(0.5)
A 		26
B 8.3
(-2.3)
A 		15
(-1.6)
A 		29.4
(-0)
A 		2
(-3)
A 		7.6
(-2.4)
A 		57.3
(3)
M 		55
C 1.9
(-2.9)
A 		11.2
(-1.9)
A 		10.4
(-2)
A 		0.8
(-3)
A 		11.4
(-1.9)
A 		59.9
(3)
P 		59
avr 5.1
(-2.6) 		18.4
(-0.7) 		17
(-0.9) 		2
(-3) 		9.3
(-2) 		45.2
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-1.4)
A 		1.1
(-0.5)
A 		0.3
(-3)
A 		2.2
(3)
A 		2
B 0.6
(-2.9)
A 		10.4
(3)
A 		0.5
(-3)
A 		2.3
(-1.9)
A 		10
C 3.5
(-0.7)
A 		7.7
(3)
P 		4.9
(0.6)
A 		0.8
(-3)
A 		7
avr 1.6
(-3) 		6.4
(3) 		1.9
(-2.6) 		1.8
(-2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1
(-2.9)
A 		10.3
(3)
A 		2.4
(-2)
A 		0.8
(-3)
A 		2.7
(-1.8)
A 		4.5
(-0.7)
A 		10
B 2.9
(-2.3)
A 		5
(-1.7)
A 		7.1
(-1.1)
A 		0.5
(-3)
A 		3.1
(-2.3)
A 		21.4
(3)
M 		21
C 0.7
(-2.8)
A 		3.4
(-2)
A 		2.7
(-2.2)
A 		0.2
(-3)
A 		3.7
(-1.9)
A 		20.1
(3)
P 		20
avr 1.5
(-2.6) 		6.2
(-0.7) 		4.1
(-1.5) 		0.5
(-3) 		3.2
(-1.9) 		15.3
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179721_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18341
Sequence Type Exemplar sequence
Representative Public ID F40F4.1 NCBI
Target Description F40F4.1 /REP_DB=WormBase Gene ID /WP=CE04531 /TR=Q20225 /GB=AAA81436.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076158(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076158 NCBI Caenorhabditis elegans F40F4.1 (F40F4.1) mRNA, complete cds. 11/11 None
SNAP00000025269 ENSEMBL cdna:SNAP chromosome:CEL140:X:3263269:3264150:1 11/11 None
F40F4.1 ENSEMBL cdna:known chromosome:CEL140:X:3262923:3264150:1 gene:F40F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3262992-3264151(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F4.1
Entrez Gene 180618 Entrez gene
SwissProt Q20225 EMBL-EBI
WormBase CE04531 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81436 Hypothetical protein F40F4.1 [Caenorhabditis elegans] ref|NP_508559.1| F40F4.1 [Caenorhabditis elegans] 0.0
blast AAA81436 Hypothetical protein F40F4.1 [Caenorhabditis elegans] ref|NP_508559.1| F40F4.1 [Caenorhabditis elegans] 1.0E-133
blast AAF39903 Hypothetical protein H24O09.2 [Caenorhabditis elegans] ref|NP_503305.1| H24O09.2 [Caenorhabditis elegans] 5.0E-67
blast AAF39903 Hypothetical protein H24O09.2 [Caenorhabditis elegans] ref|NP_503305.1| H24O09.2 [Caenorhabditis elegans] 7.0E-63
blast AAC16976 Hypothetical protein C33E10.1 [Caenorhabditis elegans] ref|NP_510808.2| C33E10.1 [Caenorhabditis elegans] 9.0E-22
blast CAB04877 Hypothetical protein T27E9.8 [Caenorhabditis elegans] ref|NP_499788.1| T27E9.8 [Caenorhabditis elegans] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-9
Sequence
Target Sequence 
>C. ELEGANS:179721_AT
tttgcgacgagttccgagatttcgatattcgatgctttatgaatcccagaaaaatgtcag
actcattgtttcatcaaaagattatgaggcacattgcaatttttgggcaagttgctatcg
actcgaatcagttgaatttgttcgtcagacattggataaagggatcaaaccccaggctcg
agtactttcaaattgatgtcccgaaaggaatgagcgtagaggacgatctttcagtgatct
tggacaaggtggactttcagaagcaaccagatagttttgtaagagactttccactatctg
tacaaggatatgaccagtttatcccaagtttcaaaaacaggattataaaaggtggagtgg
atatcaaaagagccaatggatcaatagcaactttaaagtattgcattactgacagtcatc
tcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCGACGAGTTCCGAGATTTCGA 183 669 512 Antisense
TTCGATGCTTTATGAATCCCAGAAA 574 695 539 Antisense
ATGTCAGACTCATTGTTTCATCAAA 182 49 565 Antisense
GGGCAAGTTGCTATCGACTCGAATC 702 493 616 Antisense
TAAAGGGATCAAACCCCAGGCTCGA 507 637 668 Antisense
CCCAGGCTCGAGTACTTTCAAATTG 276 259 682 Antisense
GAGCGTAGAGGACGATCTTTCAGTG 106 387 723 Antisense
GGTGGACTTTCAGAAGCAACCAGAT 125 499 759 Antisense
GAGACTTTCCACTATCTGTACAAGG 338 393 794 Antisense
ATATGACCAGTTTATCCCAAGTTTC 203 19 819 Antisense
ATTGCATTACTGACAGTCATCTCAG 160 5 911 Antisense
Sequence Source Affymetrix Proprietary Database