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[179720_at]

Description W10D9.3 /REP_DB=WormBase Gene ID /WP=CE14790 /TR=O17285 /GB=AAB71057.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 62      4grp_high_8_8 > 19      6grp_total > 50      4grp_total > 29      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 459.5
(1.8)
P 		473.6
(2.3)
P 		307
(-3)
A 		496.7
(3)
M 		190
B 449.1
(1.2)
P 		329.7
(-3)
P 		341.5
(-2.6)
P 		498.8
(3)
P 		169
C 478.4
(3)
P 		372.6
(-1)
A 		319.4
(-3)
P 		429.9
(1.2)
M 		159
avr 462.3
(2.5) 		392
(-0.3) 		322.6
(-3) 		475.1
(3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 351.3
(-1.8)
A 		331.6
(-2.3)
P 		438.2
(0)
P 		575.2
(3)
P 		305.4
(-2.8)
A 		297
(-3)
M 		278
B 379.5
(0.5)
M 		364.4
(0)
P 		453.5
(3)
P 		378.8
(0.5)
P 		363.3
(0)
P 		273.1
(-3)
P 		180
C 273.8
(-2.8)
P 		435.3
(3)
P 		313
(-1.4)
A 		371.6
(0.7)
P 		274
(-2.8)
A 		267.6
(-3)
P 		168
avr 334.9
(-0.9) 		377.1
(0.6) 		401.6
(1.5) 		441.9
(3) 		314.2
(-1.7) 		279.2
(-3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 167.3
(3)
P 		102.8
(-1.1)
P 		80.2
(-2.5)
A 		72.7
(-3)
M 		95
B 143.2
(3)
P 		81.4
(-2.8)
P 		79.1
(-3)
P 		106.3
(-0.5)
P 		64
C 158.4
(3)
P 		107.1
(-0.6)
A 		111.3
(-0.3)
P 		72.5
(-3)
M 		86
avr 156.3
(3) 		97.1
(-1.9) 		90.2
(-2.5) 		83.8
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 64.8
(-3)
A 		117.9
(0.9)
P 		95.4
(-0.7)
P 		145.9
(3)
P 		92.2
(-1)
A 		72.3
(-2.4)
M 		81
B 132.1
(1)
M 		121.3
(-0.3)
P 		110.1
(-1.8)
P 		100.3
(-3)
P 		147.6
(3)
P 		101.8
(-2.8)
P 		47
C 101.5
(-0.2)
P 		132.8
(3)
P 		79.7
(-2.5)
A 		74.7
(-3)
P 		88.7
(-1.6)
A 		89.6
(-1.5)
P 		58
avr 99.5
(-1.1) 		124
(3) 		95.1
(-1.8) 		107
(0.2) 		109.5
(0.6) 		87.9
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4491
Sequence Type Exemplar sequence
Representative Public ID W10D9.3 NCBI
Target Description W10D9.3 /REP_DB=WormBase Gene ID /WP=CE14790 /TR=O17285 /GB=AAB71057.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061338 NCBI Caenorhabditis elegans W10D9.3 (W10D9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000024355 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:456001:457870:-1 9/11 None
W10D9.3 ENSEMBL cdna:known chromosome:CEL140:II:456202:460310:-1 gene:W10D9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024352 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:456218-460310(-) 95.02 100.0
Public Domain and Genome References
Gene Title
Ensembl W10D9.3
Entrez Gene 173434 Entrez gene
SwissProt O17285 EMBL-EBI
WormBase CE14790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71057 Hypothetical protein W10D9.3 [Caenorhabditis elegans] ref|NP_493739.1| W10D9.3 [Caenorhabditis elegans] 0.0
blast AAB71057 Hypothetical protein W10D9.3 [Caenorhabditis elegans] ref|NP_493739.1| W10D9.3 [Caenorhabditis elegans] 3.0E-70
blast CAE62882 Hypothetical protein CBG07069 [Caenorhabditis briggsae] 3.0E-43
blast CAE62883 Hypothetical protein CBG07070 [Caenorhabditis briggsae] 2.0E-34
blast CAE62883 Hypothetical protein CBG07070 [Caenorhabditis briggsae] 6.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024355 1 224-246
Sequence
Target Sequence 
>C. ELEGANS:179720_AT
tgaaccctgatcaccgttttttcaaaattatggcggatttcttggaggactctgagcaaa
atgatcgaaatatctgccaaacagacttcctagccgatcaattcgaaaaatttacgcacg
attatcgcgagaaaaccgaaccaaagtgttgtgcggaaaccgactcggatcactcgaaat
gtgaacaggctgaaggaaaatcgaaacgagcgaaaaaggaaattgtgaatgtgacgagaa
agctgcaaaaagcacttatttcgttggaaatgatgccaaacgcgtcggacctcctcatcg
ccctgcgtgacatcaattctcagctgcgtgacgtcatcgtgaagcaaaactcggagttct
cgacttcaacgattccactgccggaatatgatacagtggatatgcaggcactactcggaa
ctgaagaagtagctccccaaaaatcgcttctcgagcttgtcaaagaggaccaacagcgag
ttcagacgaatttggatcggattttagcagaggcggagatcctacttcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACCCTGATCACCGTTTTTTCAA 28 573 632 Antisense
ATGGCGGATTTCTTGGAGGACTCTG 405 53 661 Antisense
CAGACTTCCTAGCCGATCAATTCGA 367 205 713 Antisense
GAAACCGACTCGGATCACTCGAAAT 27 359 787 Antisense
AAATGATGCCAAACGCGTCGGACCT 57 117 899 Antisense
TCATCGCCCTGCGTGACATCAATTC 30 623 926 Antisense
TCTCAGCTGCGTGACGTCATCGTGA 632 611 949 Antisense
GAGTTCTCGACTTCAACGATTCCAC 110 399 985 Antisense
AAGTAGCTCCCCAAAAATCGCTTCT 580 155 1058 Antisense
AATCGCTTCTCGAGCTTGTCAAAGA 535 167 1073 Antisense
GCAGAGGCGGAGATCCTACTTCAAG 587 311 1138 Antisense
Sequence Source Affymetrix Proprietary Database