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[179719_at]

Description C44B7.3 /REP_DB=WormBase Gene ID /WP=CE02541 /TR=Q18592 /GB=AAA68334.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 84.6
(2.4)
A 		55.3
(-0.1)
A 		23
(-3)
A 		90.9
(3)
A 		68
B 67.7
(0.2)
A 		89.9
(3)
A 		46.5
(-2.5)
A 		42.6
(-3)
A 		47
C 78.3
(-1.3)
A 		60.8
(-3)
A 		60.7
(-3)
A 		123.8
(3)
A 		63
avr 76.9
(1.7) 		68.7
(0.6) 		43.4
(-3) 		85.8
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 89.9
(3)
P 		40.4
(-3)
A 		75.5
(1.3)
P 		55.1
(-1.2)
A 		68.5
(0.4)
A 		88.8
(2.9)
P 		50
B 73.1
(2.5)
A 		74.8
(3)
A 		67.9
(1.1)
A 		70.3
(1.7)
M 		61.3
(-0.8)
M 		53.3
(-3)
A 		22
C 89.5
(2.1)
A 		99
(3)
P 		77.4
(1.1)
A 		58.1
(-0.7)
A 		32.5
(-3)
A 		51.1
(-1.3)
M 		67
avr 84.2
(3) 		71.4
(0.4) 		73.6
(0.9) 		61.2
(-1.6) 		54.1
(-3) 		64.4
(-0.9) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 30.8
(3)
A 		12
(-1.5)
A 		6
(-3)
A 		13.3
(-1.2)
A 		25
B 21.6
(2.7)
A 		22.2
(3)
A 		10.8
(-2.2)
A 		9.1
(-3)
A 		13
C 25.9
(3)
A 		17.5
(-3)
A 		21.2
(-0.4)
A 		20.9
(-0.6)
A 		8
avr 26.1
(3) 		17.2
(-1) 		12.7
(-3) 		14.4
(-2.2) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 16.6
(-0.9)
P 		14.4
(-2.7)
A 		16.4
(-1.1)
P 		14
(-3)
A 		20.7
(2.3)
A 		21.6
(3)
P 		8
B 25.4
(3)
A 		24.9
(2.7)
A 		16.5
(-3)
A 		18.6
(-1.6)
M 		24.9
(2.7)
M 		19.9
(-0.7)
A 		9
C 33.2
(3)
A 		30.2
(2.2)
P 		19.7
(-0.6)
A 		11.7
(-2.7)
A 		10.5
(-3)
A 		17.1
(-1.3)
M 		23
avr 25.1
(3) 		23.2
(1.9) 		17.5
(-1.4) 		14.8
(-3) 		18.7
(-0.7) 		19.5
(-0.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4842
Sequence Type Exemplar sequence
Representative Public ID C44B7.3 NCBI
Target Description C44B7.3 /REP_DB=WormBase Gene ID /WP=CE02541 /TR=Q18592 /GB=AAA68334.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063001
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000042316 ENSEMBL cdna:SNAP chromosome:CEL140:II:6860719:6863682:-1 None
NM_063001 NCBI Caenorhabditis elegans C44B7.3 (C44B7.3) mRNA, complete cds. None
C44B7.3 ENSEMBL cdna:known chromosome:CEL140:II:6860576:6863682:-1 gene:C44B7.3 A 
GENEFINDER00000042340 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6860719:6863682:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6860042-6863633(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B7.3
Entrez Gene 174123 Entrez gene
SwissProt Q18592 EMBL-EBI
WormBase CE32328 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68334 Hypothetical protein C44B7.3 [Caenorhabditis elegans] ref|NP_495402.2| C44B7.3 [Caenorhabditis elegans] 0.0
blast CAE65980 Hypothetical protein CBG11169 [Caenorhabditis briggsae] 0.0
blast CAD36481 Hypothetical protein C26D10.5b [Caenorhabditis elegans] ref|NP_001021988.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84283.1| EFF-1B precursor [Caenorhabditis elegans] 5.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495402.2 1 525-559
C44B7.3 1 525-559
SNAP00000042316 1 540-574
GENEFINDER00000042340 1 540-574
Sequence
Target Sequence 
>C. ELEGANS:179719_AT
agctcatcgcgacttttgcatgtactgctcaatttggaacgtctctgaaagatgatggta
gtagaataagtcttccatcgactataaatcaagctcaatgggtgtgtattcttcccgatg
agcagccaacaaaatcagaaatatgcaaatggattccatatgaggaaaaagcaatgagaa
ctccgagacaagaacaaagttggtcaaaaggacattcaccgtgctcacaagcagaatgta
atagtctgaaaagtggagtgagcgacttgttcccatggattatgaattttgattatttta
tggctcatggtggggatttcacagagtggctaaaaattggaatccatatagtgatagcta
ttgaattatttatatcaattttcttttcttccaatcggggaagcacggcgtgccttaaag
gatttttgactaaatgcaccaaatggtctcgcagcgatatgcgaatgaaggagtacggta
gttttcgaaacatgttcgttcattccgattttcattgcgcaattatttgtcttctctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCATCGCGACTTTTGCATGTAC 113 81 1250 Antisense
GTACTGCTCAATTTGGAACGTCTCT 91 459 1271 Antisense
TGGGTGTGTATTCTTCCCGATGAGC 369 553 1348 Antisense
TCAAAAGGACATTCACCGTGCTCAC 27 631 1453 Antisense
AGTGGAGTGAGCGACTTGTTCCCAT 411 59 1501 Antisense
TTTATGGCTCATGGTGGGGATTTCA 523 671 1546 Antisense
CAATCGGGGAAGCACGGCGTGCCTT 619 179 1641 Antisense
AAATGCACCAAATGGTCTCGCAGCG 371 117 1681 Antisense
GAAACATGTTCGTTCATTCCGATTT 681 355 1736 Antisense
TCATTCCGATTTTCATTGCGCAATT 458 619 1749 Antisense
TGCGCAATTATTTGTCTTCTCTCTG 235 585 1765 Antisense
Sequence Source Affymetrix Proprietary Database