[Home] | [Total List]

[179718_at] 7TM chemoreceptor, srw family

Description H24D24.2 /REP_DB=WormBase Gene ID /WP=CE18822 /TR=Q9XXM3 /GB=CAA18358.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 33      4grp_total > 18      6grp_cgc > 71      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 52.8
(-3)
P 		90.2
(0.2)
M 		93.5
(0.5)
A 		122.9
(3)
P 		70
B 72.5
(-3)
P 		90.4
(-0.3)
A 		84.6
(-1.2)
P 		112.5
(3)
P 		40
C 87.8
(-1.2)
P 		121.2
(0.5)
P 		55
(-3)
P 		167.1
(3)
P 		112
avr 71
(-3) 		100.6
(-0.2) 		77.7
(-2.4) 		134.2
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 94.3
(-0.2)
P 		43.7
(-3)
A 		151.9
(3)
P 		57.5
(-2.2)
M 		91.4
(-0.4)
P 		83.2
(-0.8)
P 		108
B 67.5
(0.9)
M 		75.8
(3)
M 		52
(-3)
M 		65.6
(0.4)
A 		53.9
(-2.5)
A 		60.3
(-0.9)
A 		24
C 81.6
(0.4)
P 		120.7
(3)
P 		70.1
(-0.3)
A 		103.2
(1.8)
A 		30
(-3)
A 		54.3
(-1.4)
P 		91
avr 81.1
(1.1) 		80.1
(1) 		91.3
(3) 		75.4
(0.1) 		58.4
(-3) 		65.9
(-1.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.2
(-1.9)
P 		19.6
(-1.5)
M 		24.4
(3)
A 		18
(-3)
P 		6
B 23.1
(1.8)
P 		22.3
(0.7)
A 		19.6
(-3)
P 		24
(3)
P 		4
C 29
(0.7)
P 		34.9
(3)
P 		19.2
(-3)
P 		28.2
(0.4)
P 		16
avr 23.8
(0.6) 		25.6
(3) 		21.1
(-3) 		23.4
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 17.4
(-2.1)
P 		15.5
(-2.7)
A 		33.1
(3)
P 		14.6
(-3)
M 		27.6
(1.2)
P 		20.3
(-1.2)
P 		19
B 23.5
(2.2)
M 		25.2
(3)
M 		12.6
(-3)
M 		17.4
(-0.7)
A 		21.9
(1.4)
A 		22.5
(1.7)
A 		13
C 30.2
(1.5)
P 		36.8
(3)
P 		17.9
(-1.2)
A 		20.8
(-0.5)
A 		9.7
(-3)
A 		18.2
(-1.1)
P 		27
avr 23.7
(1.5) 		25.8
(3) 		21.2
(-0.4) 		17.6
(-3) 		19.7
(-1.5) 		20.3
(-1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13039
Sequence Type Exemplar sequence
Representative Public ID H24D24.2 NCBI
Target Description H24D24.2 /REP_DB=WormBase Gene ID /WP=CE18822 /TR=Q9XXM3 /GB=CAA18358.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074594 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-58) (srw-58) mRNA, complete cds. 11/11 None
GENEFINDER00000020483 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15950037:15953513:-1 10/11 None
H24D24.2 ENSEMBL cdna:known chromosome:CEL140:V:15949882:15951044:-1 gene:H24D24.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020482 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15949881-15951044(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-58
Ensembl H24D24.2
Entrez Gene 186772 Entrez gene
SwissProt Q9XXM3 EMBL-EBI
WormBase CE18822 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18358 Hypothetical protein H24D24.2 [Caenorhabditis elegans] ref|NP_506995.1| Serpentine Receptor, class W family member (srw-58) [Caenorhabditis elegans] 0.0
blast CAA18357 Hypothetical protein H24D24.1 [Caenorhabditis elegans] ref|NP_506996.1| Serpentine Receptor, class W family member (srw-59) [Caenorhabditis elegans] 1.0E-167
blast CAA18358 Hypothetical protein H24D24.2 [Caenorhabditis elegans] ref|NP_506995.1| Serpentine Receptor, class W family member (srw-58) [Caenorhabditis elegans] 1.0E-165
blast CAB04333 Hypothetical protein F36G9.1 [Caenorhabditis elegans] ref|NP_506997.2| Serpentine Receptor, class W family member (srw-57) [Caenorhabditis elegans] 3.0E-99
blast CAB04333 Hypothetical protein F36G9.1 [Caenorhabditis elegans] ref|NP_506997.2| Serpentine Receptor, class W family member (srw-57) [Caenorhabditis elegans] 1.0E-95
blast CAE17829 Hypothetical protein F36G9.16 [Caenorhabditis elegans] ref|NP_001023889.1| Serpentine Receptor, class W family member (srw-56) [Caenorhabditis elegans] 1.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.4E-33
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 3.5E-30
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.4E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506995.1 7 41-58,65-84,126-148,155-173,221-243,264-286,306-328
H24D24.2 7 41-58,65-84,126-148,155-173,221-243,264-286,306-328
GENEFINDER00000020483 12 10-27,34-56,101-123,128-150,199-221,242-264,279-301,371-393,435-457,470-492,540-562,583-605
Sequence
Target Sequence 
>C. ELEGANS:179718_AT
aaaagcttgctgtctggtttggggttacaatggcggttctaagggtttttataataaaat
acccattgagtaagtacggcatccgaatttttctaatcgtatgtcttccccatataccct
tctgggtagtcgatttcaaaatggatgaaatttatgagtataatgtttgggtgtctccac
ctagttgcaccaacttacctggaaacactagccgtactcgatacattgtagaacctggag
aatacgataacgaaataatgcttaaaatggaaggatatttgttcacagtttttccatctg
ttgttcttttaattactgcaggagttcttatttattttttaagaagaatgaaaaagccat
cagtctcaagcaatgataacaatgatcgttctacgaaaatggtggttttggtcactgtta
catttttgatatcaactacaccacttgggattatttattttctcccaattgccgaacttg
attatggaacaactattgtcattgatatgattagtatgtcatgtgaattcgtgtctcttc
tcaatggaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCTTGCTGTCTGGTTTGGGGT 374 131 401 Antisense
GTACGGCATCCGAATTTTTCTAATC 453 443 474 Antisense
TTTTCTAATCGTATGTCTTCCCCAT 503 675 489 Antisense
CTTCCCCATATACCCTTCTGGGTAG 390 219 505 Antisense
AATGTTTGGGTGTCTCCACCTAGTT 690 163 562 Antisense
GTTGCACCAACTTACCTGGAAACAC 195 439 584 Antisense
GGAAACACTAGCCGTACTCGATACA 338 527 601 Antisense
GTTCACAGTTTTTCCATCTGTTGTT 523 445 681 Antisense
GAAAAAGCCATCAGTCTCAAGCAAT 223 355 750 Antisense
TTTTCTCCCAATTGCCGAACTTGAT 150 677 858 Antisense
TTCGTGTCTCTTCTCAATGGAATAC 331 695 928 Antisense
Sequence Source Affymetrix Proprietary Database