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[179717_at]

Description R09H3.1 /REP_DB=WormBase Gene ID /WP=CE07445 /TR=Q21885 /GB=AAB00611.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 27.5
(-2)
A 		51.1
(1.7)
A 		20.8
(-3)
A 		59.2
(3)
A 		38
B 57.9
(3)
A 		57.3
(2.8)
A 		44.3
(-0.7)
A 		36
(-3)
A 		22
C 42
(1.9)
A 		34.9
(0.3)
A 		19.8
(-3)
A 		46.9
(3)
A 		27
avr 42.5
(1.4) 		47.8
(3) 		28.3
(-3) 		47.4
(2.9) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 68.2
(3)
A 		13.5
(-3)
A 		31.8
(-1)
A 		40.6
(-0)
A 		54.4
(1.5)
A 		51.1
(1.1)
A 		55
B 36.2
(1.9)
A 		40.3
(3)
P 		36
(1.8)
P 		34.5
(1.4)
A 		18.9
(-3)
A 		37.8
(2.3)
A 		21
C 25
(-0.7)
A 		44.1
(2.7)
P 		25
(-0.7)
A 		46
(3)
A 		23.7
(-0.9)
A 		11.6
(-3)
A 		34
avr 43.1
(3) 		32.6
(-2.2) 		30.9
(-3) 		40.4
(1.7) 		32.3
(-2.3) 		33.5
(-1.7) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10
(1.8)
A 		11.1
(3)
A 		5.4
(-3)
A 		8.7
(0.5)
A 		6
B 18.5
(3)
A 		14.1
(0.6)
A 		10.3
(-1.6)
A 		7.7
(-3)
A 		11
C 13.9
(3)
A 		10
(-0.3)
A 		6.9
(-3)
A 		7.9
(-2.1)
A 		7
avr 14.1
(3) 		11.7
(0.8) 		7.5
(-3) 		8.1
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 12.6
(1)
A 		4.8
(-3)
A 		6.9
(-1.9)
A 		10.3
(-0.2)
A 		16.4
(3)
A 		12.5
(1)
A 		12
B 12.6
(1.6)
A 		13.4
(2.3)
P 		8.7
(-2.1)
P 		9.2
(-1.6)
A 		7.7
(-3)
A 		14.1
(3)
A 		6
C 9.3
(0.4)
A 		13.5
(3)
P 		6.4
(-1.4)
A 		9.3
(0.4)
A 		7.7
(-0.6)
A 		3.9
(-3)
A 		10
avr 11.5
(3) 		10.6
(1.7) 		7.3
(-3) 		9.6
(0.3) 		10.6
(1.7) 		10.2
(1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179717_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18219
Sequence Type Exemplar sequence
Representative Public ID R09H3.1 NCBI
Target Description R09H3.1 /REP_DB=WormBase Gene ID /WP=CE07445 /TR=Q21885 /GB=AAB00611.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075904 NCBI Caenorhabditis elegans R09H3.1 (R09H3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000032510 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1658547:1660410:-1 11/11 None
R09H3.1 ENSEMBL cdna:known chromosome:CEL140:X:1658547:1662751:-1 gene:R09H3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005679 1/11 Cross Hyb Matching Probes None
SNAP00000032503 4/11 Cross Hyb Matching Probes None
SNAP00000032504 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1658546-1662751(-) 92.74 100.0
Public Domain and Genome References
Gene Title
Ensembl R09H3.1
Entrez Gene 187752 Entrez gene
SwissProt Q21885 EMBL-EBI
WormBase CE07445 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00611 Hypothetical protein R09H3.1 [Caenorhabditis elegans] ref|NP_508305.1| R09H3.1 [Caenorhabditis elegans] 0.0
blast CAB03949 Hypothetical protein C38D9.3 [Caenorhabditis elegans] ref|NP_507451.1| C38D9.3 [Caenorhabditis elegans] 1.0E-107
blast CAB02490 Hypothetical protein F15D4.7 [Caenorhabditis elegans] emb|CAB60425.1| Hypothetical protein F15D4.7 [Caenorhabditis elegans] ref|NP_496808.1| F15D4.7 [Caenorhabditis elegans] 1.0E-106
blast CAB03949 Hypothetical protein C38D9.3 [Caenorhabditis elegans] ref|NP_507451.1| C38D9.3 [Caenorhabditis elegans] 8.0E-61
blast CAB02490 Hypothetical protein F15D4.7 [Caenorhabditis elegans] emb|CAB60425.1| Hypothetical protein F15D4.7 [Caenorhabditis elegans] ref|NP_496808.1| F15D4.7 [Caenorhabditis elegans] 4.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508305.1 1 1010-1032
R09H3.1 1 1010-1032
GENEFINDER00000032510 1 334-356
Sequence
Target Sequence 
>C. ELEGANS:179717_AT
tatcccgacaaccttttacagtactctaatatcggtttcccattgaaaagcccactattc
ttaaccaatattcgtactgttgtgtcatggtttaccgggacacacggggagagagggcga
ggtactggagacgtgatcgacaccgactacatacatcctacacggcctccacattttctg
tcaattgaattgaaaaaaattcaaattgattttactcgaccttcgaattcacatgaatca
ggtttaatgtactggcaatctaacttgtaccttcatttagacttactagttctcttcgac
atgttccttaactcaaccacaaaagcggacggtctgttcatttttactctgagcaactat
gaaagagaagacgcaatgtttaggcttcttgccggcatcacgtctttcgtcttattcatg
atgtgcctgtcagtcctgtgttgttttctgagatgctcaaaagctccgaaaattcttcca
acagccattttcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCCGACAACCTTTTACAGTACT 562 657 2668 Antisense
AGTACTCTAATATCGGTTTCCCATT 546 57 2687 Antisense
GACGTGATCGACACCGACTACATAC 106 375 2797 Antisense
GCCTCCACATTTTCTGTCAATTGAA 126 283 2832 Antisense
GGCAATCTAACTTGTACCTTCATTT 208 533 2921 Antisense
GACTTACTAGTTCTCTTCGACATGT 121 373 2947 Antisense
TCGACATGTTCCTTAACTCAACCAC 611 601 2963 Antisense
AATGTTTAGGCTTCTTGCCGGCATC 692 163 3042 Antisense
GCATCACGTCTTTCGTCTTATTCAT 282 309 3062 Antisense
TCATGATGTGCCTGTCAGTCCTGTG 259 623 3083 Antisense
AAATTCTTCCAACAGCCATTTTCGG 50 115 3137 Antisense
Sequence Source Affymetrix Proprietary Database