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[179716_at] 7TM chemoreceptor, srt family

Description B0238.6 /REP_DB=WormBase Gene ID /WP=CE07696 /TR=O16491 /GB=AAB65986.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 30      4grp_high_8_8 > 28      6grp_total > 43      4grp_total > 27      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 37.7
(-1.3)
P 		39.2
(-0.8)
A 		32.4
(-3)
P 		50.6
(3)
P 		18
B 46.9
(2.7)
P 		48.5
(3)
P 		18.1
(-3)
A 		39.1
(1.1)
A 		30
C 23.7
(-3)
A 		61.7
(1.6)
P 		37.6
(-1.3)
P 		73.6
(3)
P 		50
avr 36.1
(-1.4) 		49.8
(1.9) 		29.4
(-3) 		54.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 66.1
(3)
P 		34.5
(-1.1)
P 		58.4
(2)
P 		39.4
(-0.5)
A 		20.4
(-3)
A 		37.5
(-0.8)
P 		46
B 35.9
(0.9)
P 		30.8
(-0.4)
P 		44.2
(3)
A 		33.9
(0.4)
P 		33.2
(0.2)
P 		20.5
(-3)
A 		24
C 21.7
(-3)
M 		45.2
(3)
P 		39
(1.4)
A 		31.5
(-0.5)
A 		30
(-0.9)
P 		39.9
(1.6)
P 		24
avr 41.2
(1.1) 		36.8
(-0.2) 		47.2
(3) 		34.9
(-0.8) 		27.9
(-3) 		32.6
(-1.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 13.7
(3)
P 		8.5
(-2)
A 		8.5
(-2)
P 		7.4
(-3)
P 		6
B 15
(3)
P 		12
(1.3)
P 		4.2
(-3)
A 		8.3
(-0.7)
A 		11
C 7.8
(-3)
A 		17.7
(3)
P 		13.1
(0.2)
P 		12.4
(-0.2)
P 		10
avr 12.2
(2.3) 		12.7
(3) 		8.6
(-3) 		9.4
(-1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 12.2
(2.5)
P 		12.3
(2.6)
P 		12.7
(3)
P 		10
(0.5)
A 		6.2
(-3)
A 		9.1
(-0.3)
P 		7
B 12.5
(2)
P 		10.3
(-0.3)
P 		10.7
(0.1)
A 		9
(-1.7)
P 		13.5
(3)
P 		7.7
(-3)
A 		6
C 8
(-1.6)
M 		13.8
(3)
P 		9.9
(-0.1)
A 		6.3
(-3)
A 		9.7
(-0.3)
P 		13.3
(2.6)
P 		8
avr 10.9
(1.1) 		12.1
(3) 		11.1
(1.4) 		8.4
(-3) 		9.8
(-0.7) 		10
(-0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12268
Sequence Type Exemplar sequence
Representative Public ID B0238.6 NCBI
Target Description B0238.6 /REP_DB=WormBase Gene ID /WP=CE07696 /TR=O16491 /GB=AAB65986.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072005 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-70) (srt-70) mRNA, complete cds. 11/11 None
SNAP00000038870 ENSEMBL cdna:SNAP chromosome:CEL140:V:5257848:5258466:-1 9/11 None
B0238.6 ENSEMBL cdna:known chromosome:CEL140:V:5257848:5259360:-1 gene:B0238.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5257847-5259360(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-70
Ensembl B0238.6
Entrez Gene 181870 Entrez gene
SwissProt O16491 EMBL-EBI
WormBase CE07696 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65986 Serpentine receptor, class t protein 70 [Caenorhabditis elegans] ref|NP_504406.1| Serpentine Receptor, class T family member (srt-70) [Caenorhabditis elegans] 0.0
blast AAB65986 Serpentine receptor, class t protein 70 [Caenorhabditis elegans] ref|NP_504406.1| Serpentine Receptor, class T family member (srt-70) [Caenorhabditis elegans] 3.0E-94
blast AAB65987 Serpentine receptor, class t protein 69 [Caenorhabditis elegans] ref|NP_504408.3| Serpentine Receptor, class T family member (srt-69) [Caenorhabditis elegans] 2.0E-87
blast CAE64166 Hypothetical protein CBG08788 [Caenorhabditis briggsae] 7.0E-80
blast CAE64166 Hypothetical protein CBG08788 [Caenorhabditis briggsae] 7.0E-38
blast AAB65987 Serpentine receptor, class t protein 69 [Caenorhabditis elegans] ref|NP_504408.3| Serpentine Receptor, class T family member (srt-69) [Caenorhabditis elegans] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 9.5E-83
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.1E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504406.1 7 15-34,54-76,96-118,130-152,177-199,216-238,253-275
B0238.6 7 15-34,54-76,96-118,130-152,177-199,216-238,253-275
SNAP00000038870 3 26-48,65-87,102-124
Sequence
Target Sequence 
>C. ELEGANS:179716_AT
aaatgtgctttattcctcatcatcacatggacaatgttcctgatatttgtgggatgtgcc
acgctaaatatgcaactagtgacacctggatgggactatgacttcagtgtttcaagtgca
gaaatattggctaatttggaagtgctgttgagcttcgcgtgcttagcatcatcctatgtt
gcttatctgttcatggcttatttgatttatgcgaagaaaaatcttgtaagttgtgtacat
tcgcggaaaaatgagattgcaattcttgttcaatcgacatttgtaacaacttatataact
gcaatgatatttgtctggcaccaatcattattctcaaagatctcgtttattgatatggag
agcaaaagaaatcaagcaattcttaattgttgtctgattattcattgctatgtcaaccca
ataatgacgttggtttgtaataaatcaattcgagatgaatgccttagatttcttaaaatc
aagaaaaggccgagtaggccatcacgaagtgacattctttcgaaactttcttcaattcac
ccgataaatccttcggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTGCTTTATTCCTCATCATCA 320 121 397 Antisense
GGATGTGCCACGCTAAATATGCAAC 34 515 448 Antisense
GACACCTGGATGGGACTATGACTTC 255 367 477 Antisense
TTGAGCTTCGCGTGCTTAGCATCAT 14 707 544 Antisense
CATCATCCTATGTTGCTTATCTGTT 546 213 563 Antisense
GTTGCTTATCTGTTCATGGCTTATT 606 439 574 Antisense
GTCTGGCACCAATCATTATTCTCAA 140 473 709 Antisense
GATTATTCATTGCTATGTCAACCCA 76 427 792 Antisense
GGCCGAGTAGGCCATCACGAAGTGA 462 543 884 Antisense
TCGAAACTTTCTTCAATTCACCCGA 382 601 916 Antisense
AATTCACCCGATAAATCCTTCGGCT 114 177 930 Antisense
Sequence Source Affymetrix Proprietary Database