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[179715_at] 7TM chemoreceptor, srsx family

Description F58D7.1 /REP_DB=WormBase Gene ID /WP=CE11366 /TR=O16337 /GB=AAB65875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 38      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 83
(3)
A 		52.5
(0.1)
A 		20.8
(-3)
A 		52.5
(0.1)
A 		62
B 89
(3)
A 		11.3
(-2.9)
A 		27.2
(-1.7)
A 		10.2
(-3)
A 		79
C 61
(3)
A 		30
(-0.5)
A 		7.5
(-3)
A 		51.3
(1.9)
A 		54
avr 77.7
(3) 		31.3
(-1.7) 		18.5
(-3) 		38
(-1) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 7.8
(-2.5)
A 		28.1
(2.2)
A 		22.5
(0.9)
A 		5.6
(-3)
A 		31.5
(3)
A 		31.4
(3)
A 		26
B 9.8
(-2.6)
A 		15.6
(-1)
A 		30.1
(3)
A 		23.6
(1.2)
A 		15.5
(-1)
A 		8.2
(-3)
A 		22
C 38.3
(0.3)
A 		63.8
(3)
A 		11.4
(-2.5)
A 		7.1
(-2.9)
A 		34.6
(-0)
A 		6.2
(-3)
A 		58
avr 18.6
(-1.4) 		35.8
(3) 		21.3
(-0.7) 		12.1
(-3) 		27.2
(0.8) 		15.3
(-2.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 30.2
(3)
A 		11.4
(-1.5)
A 		5.4
(-3)
A 		7.7
(-2.4)
A 		25
B 28.4
(3)
A 		2.8
(-2.9)
A 		6.3
(-2.1)
A 		2.2
(-3)
A 		26
C 20.2
(3)
A 		8.6
(-1)
A 		2.6
(-3)
A 		8.6
(-1)
A 		18
avr 26.3
(3) 		7.6
(-2.2) 		4.8
(-3) 		6.2
(-2.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.4
(-3)
A 		10
(3)
A 		4.9
(-0.6)
A 		1.4
(-3)
A 		9.5
(2.7)
A 		7.6
(1.3)
A 		9
B 3.4
(-2.6)
A 		5.2
(0)
A 		7.3
(3)
A 		6.2
(1.4)
A 		6.3
(1.6)
A 		3.1
(-3)
A 		4
C 14.2
(1.2)
A 		19.5
(3)
A 		2.9
(-2.5)
A 		1.4
(-3)
A 		11.2
(0.2)
A 		2.1
(-2.8)
A 		18
avr 6.3
(-0.7) 		11.6
(3) 		5
(-1.6) 		3
(-3) 		9
(1.2) 		4.3
(-2.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179715_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11704
Sequence Type Exemplar sequence
Representative Public ID F58D7.1 NCBI
Target Description F58D7.1 /REP_DB=WormBase Gene ID /WP=CE11366 /TR=O16337 /GB=AAB65875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072143(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072143 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-17) (srsx-17) mRNA, complete cds. 9/11 None
GENEFINDER00000040506 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5930241:5932990:1 9/11 None
F58D7.1 ENSEMBL cdna:known chromosome:CEL140:V:5930241:5933011:1 gene:F58D7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040505 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5930240-5933011(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-17
Ensembl F58D7.1
Entrez Gene 186503 Entrez gene
SwissProt O16337 EMBL-EBI
WormBase CE38195 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65875 Serpentine receptor, class sx protein 17 [Caenorhabditis elegans] ref|NP_504544.2| Serpentine Receptor, class SX family member (srsx-17) [Caenorhabditis elegans] 1.0E-167
blast AAB65875 Serpentine receptor, class sx protein 17 [Caenorhabditis elegans] ref|NP_504544.2| Serpentine Receptor, class SX family member (srsx-17) [Caenorhabditis elegans] 1.0E-164
blast AAB65875 Serpentine receptor, class sx protein 17 [Caenorhabditis elegans] ref|NP_504544.2| Serpentine Receptor, class SX family member (srsx-17) [Caenorhabditis elegans] 1.0E-156
blast CAE64543 Hypothetical protein CBG09287 [Caenorhabditis briggsae] 1.0E-147
blast CAE64543 Hypothetical protein CBG09287 [Caenorhabditis briggsae] 1.0E-144
blast CAE64543 Hypothetical protein CBG09287 [Caenorhabditis briggsae] 1.0E-143
blast AAK39146 Serpentine receptor, class sx protein 18 [Caenorhabditis elegans] ref|NP_504543.1| Serpentine Receptor, class SX family member (srsx-18) [Caenorhabditis elegans] 1.0E-115
blast AAK39146 Serpentine receptor, class sx protein 18 [Caenorhabditis elegans] ref|NP_504543.1| Serpentine Receptor, class SX family member (srsx-18) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504544.2 6 10-32,44-66,81-103,124-146,166-188,226-248
F58D7.1 5 10-32,113-135,150-169,202-224,261-283
GENEFINDER00000040506 6 10-32,44-66,81-103,124-146,166-188,226-248
Sequence
Target Sequence 
>C. ELEGANS:179715_AT
ttctcctgttttgctctttttatagaagaaatctacatcaatcacgacgatttgctcatc
tgcacgaattttaaggaatttcgagaaataatttttttagctgctccacctgcagtccgg
ttttggggtacgctcatcacaatttcaacaatatttctggccgtttcactaattttcgta
acagcctttaaagttcatattaacgaacgagaatcagcacgaaggatactaagacactcg
aacagtattacaagcaatacaaaatgttcagattcaaaattgctcaagtcattgtcaact
ctgatgtttgtgtttgtgtgctcgtggagtttatccattttgttatcacacgtttcatta
tattttacaaaaaatgtcgcgtatgaaattcaaaagtacaatgtaagtgtgcttgcaaaa
agtttccatgggtggtataaaatcctcctctcccttccaacattctgccaaaactttttt
gtaaccggtcttcgatctccacgatacgctaaagcctatgcagaacaactctcatttctt
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCTGTTTTGCTCTTTTTATAG 498 693 496 Antisense
TCACGACGATTTGCTCATCTGCACG 211 627 537 Antisense
ATAATTTTTTTAGCTGCTCCACCTG 67 25 583 Antisense
GTTTTGGGGTACGCTCATCACAATT 493 433 615 Antisense
TCTGGCCGTTTCACTAATTTTCGTA 187 601 651 Antisense
ATTGCTCAAGTCATTGTCAACTCTG 399 5 774 Antisense
TGATGTTTGTGTTTGTGTGCTCGTG 147 567 797 Antisense
TATCCATTTTGTTATCACACGTTTC 668 657 827 Antisense
TGGGTGGTATAAAATCCTCCTCTCC 684 553 924 Antisense
TCTTCGATCTCCACGATACGCTAAA 700 617 984 Antisense
ATGCAGAACAACTCTCATTTCTTCC 638 43 1013 Antisense
Sequence Source Affymetrix Proprietary Database