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[179714_at]

Description F13D12.3 /REP_DB=WormBase Gene ID /WP=CE03197 /TR=Q19395 /GB=CAA88949.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 57      6grp_highest_nonorm > 84      6grp_total > 58      4grp_total > 09      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1474
1 2 3 4 range
A 226.1
(-3)
A 		353.4
(-2.4)
A 		329.7
(-2.5)
A 		1582.7
(3)
P 		1357
B 221.9
(-3)
P 		375.7
(-2.4)
A 		395.8
(-2.3)
A 		1674.9
(3)
P 		1453
C 200.9
(-3)
A 		341.1
(-2.4)
A 		398.8
(-2.2)
A 		1651.8
(3)
P 		1451
avr 216.3
(-3) 		356.7
(-2.4) 		374.8
(-2.3) 		1636.5
(3) 		1420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 822
1 2 3 4 5 6 range
A 958.1
(1.3)
P 		363.9
(-3)
P 		529
(-1.8)
P 		437.3
(-2.5)
P 		495.6
(-2)
P 		1185.7
(3)
P 		822
B 822.4
(1.2)
P 		382
(-3)
P 		497.3
(-1.9)
P 		437.3
(-2.5)
P 		427.5
(-2.6)
P 		1005.7
(3)
P 		624
C 904.2
(3)
P 		414.3
(-3)
P 		455.7
(-2.5)
P 		459.6
(-2.4)
P 		542.5
(-1.4)
P 		842.7
(2.2)
P 		490
avr 894.9
(1.9) 		386.7
(-3) 		494
(-2) 		444.7
(-2.4) 		488.5
(-2) 		1011.4
(3) 		625
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 82.3
(-2.8)
A 		76.7
(-3)
A 		86.2
(-2.6)
A 		231.7
(3)
P 		155
B 70.8
(-3)
P 		92.8
(-2.5)
A 		91.7
(-2.6)
A 		356.9
(3)
P 		286
C 66.5
(-3)
A 		98.1
(-2.1)
A 		139
(-0.9)
A 		278.5
(3)
P 		212
avr 73.2
(-3) 		89.2
(-2.6) 		105.6
(-2.1) 		289
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 176.6
(-0.8)
P 		129.4
(-2.4)
P 		115.2
(-2.9)
P 		110.9
(-3)
P 		149.5
(-1.7)
P 		288.7
(3)
P 		178
B 286.2
(0.9)
P 		127.1
(-2.7)
P 		120.8
(-2.9)
P 		115.8
(-3)
P 		173.7
(-1.7)
P 		375
(3)
P 		259
C 335.1
(3)
P 		126.4
(-2.2)
P 		116
(-2.4)
P 		92.4
(-3)
P 		175.6
(-0.9)
P 		282.1
(1.7)
P 		243
avr 266
(1.6) 		127.6
(-2.4) 		117.3
(-2.7) 		106.4
(-3) 		166.3
(-1.3) 		315.3
(3) 		209
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3774
Sequence Type Exemplar sequence
Representative Public ID F13D12.3 NCBI
Target Description F13D12.3 /REP_DB=WormBase Gene ID /WP=CE03197 /TR=Q19395 /GB=CAA88949.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064101 NCBI Caenorhabditis elegans F13D12.3 (F13D12.3) mRNA, complete cds. 11/11 None
SNAP00000015027 ENSEMBL cdna:SNAP chromosome:CEL140:II:11720497:11722064:1 11/11 None
GENEFINDER00000015055 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11720497:11722064:1 11/11 None
F13D12.3 ENSEMBL cdna:known chromosome:CEL140:II:11720441:11722213:1 gene:F13D12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11720493-11722061(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13D12.3
Entrez Gene 174797 Entrez gene
SwissProt Q19395 EMBL-EBI
WormBase CE03197 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88949 Hypothetical protein F13D12.3 [Caenorhabditis elegans] ref|NP_496502.1| F13D12.3 [Caenorhabditis elegans] 6.0E-35
blast CAE59705 Hypothetical protein CBG03137 [Caenorhabditis briggsae] 1.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496502.1 1 4-21
F13D12.3 1 4-21
SNAP00000015027 1 4-21
GENEFINDER00000015055 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:179714_AT
cctcatacgggcggccttcaagttatgggccaccacagccaagctactccccaccaaaat
cctcatatggacgcccagaacccacctactccccatattcgcggcctagctcttcatatg
gaagaccacctcagttctatccagctcagccaggtccagcggtgccagctgtgatacctc
cagttgtcactcagccaattgtgccgcctccagttccagaagtttctgagccagttccag
agccaccaatcccagctccaggccctgttgctccaccaacaccatctggtccactattcg
gaggagttgagccaggagccggagctcttaccccaggagttgctccaccaccaactgatg
aggagatgacaagggtggacgcagcggaaaaggagaatgaggtccgaaaagctcgtggtg
gacctccaggcatcaatgtggcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCATACGGGCGGCCTTCAAGTTA 709 247 239 Antisense
TCAAGTTATGGGCCACCACAGCCAA 658 631 256 Antisense
AAATCCTCATATGGACGCCCAGAAC 494 117 295 Antisense
TGGAAGACCACCTCAGTTCTATCCA 256 547 357 Antisense
GTCCAGCGGTGCCAGCTGTGATACC 521 477 392 Antisense
AGCTGTGATACCTCCAGTTGTCACT 608 79 405 Antisense
AGTTGTCACTCAGCCAATTGTGCCG 443 65 420 Antisense
AGTTTCTGAGCCAGTTCCAGAGCCA 110 63 459 Antisense
CACCATCTGGTCCACTATTCGGAGG 498 201 518 Antisense
GTTGAGCCAGGAGCCGGAGCTCTTA 23 439 544 Antisense
GACCTCCAGGCATCAATGTGGCAGC 448 383 659 Antisense
Sequence Source Affymetrix Proprietary Database