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[179713_at]

Description F46B6.11 /REP_DB=WormBase Gene ID /WP=CE05877 /TR=Q20452 /GB=CAA94827.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 11      6grp_cgc > 54      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 76.8
(-2)
A 		72.1
(-2.2)
A 		46.5
(-3)
A 		233.6
(3)
P 		187
B 75.6
(-2.5)
A 		77.1
(-2.4)
A 		62.6
(-3)
A 		213
(3)
P 		150
C 90.2
(-1.8)
A 		87.1
(-2)
A 		62.4
(-3)
A 		205.4
(3)
P 		143
avr 80.9
(-2.1) 		78.8
(-2.2) 		57.2
(-3) 		217.3
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 32.7
(-3)
A 		76.3
(-0.5)
A 		139
(3)
P 		40.3
(-2.6)
A 		47.1
(-2.2)
A 		74.6
(-0.6)
A 		106
B 96.3
(3)
A 		88.1
(2)
M 		82.6
(1.4)
A 		44.7
(-3)
A 		85.3
(1.7)
A 		55.7
(-1.7)
A 		52
C 50.7
(-2.3)
A 		117.5
(3)
A 		58
(-1.7)
A 		41.4
(-3)
A 		102.2
(1.8)
A 		67.9
(-0.9)
A 		76
avr 59.9
(-0.9) 		94
(3) 		93.2
(2.9) 		42.1
(-3) 		78.2
(1.2) 		66.1
(-0.2) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 28
(1.3)
A 		15.6
(-2.1)
A 		12.2
(-3)
A 		34.2
(3)
P 		22
B 24.1
(-1.1)
A 		19.1
(-2.1)
A 		14.5
(-3)
A 		45.4
(3)
P 		31
C 29.9
(0.8)
A 		25
(-1.5)
A 		21.8
(-3)
A 		34.6
(3)
P 		13
avr 27.3
(0) 		19.9
(-2) 		16.2
(-3) 		38.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 6
(-3)
A 		27.1
(2.2)
A 		30.3
(3)
P 		10.2
(-2)
A 		14.2
(-1)
A 		18.2
(0)
A 		24
B 33.5
(2.7)
A 		29.3
(1.6)
M 		20
(-0.9)
A 		11.8
(-3)
A 		34.7
(3)
A 		20.8
(-0.6)
A 		23
C 18.8
(-0.7)
A 		35.9
(3)
A 		14.8
(-1.6)
A 		8.3
(-3)
A 		33.1
(2.4)
A 		22.7
(0.1)
A 		28
avr 19.4
(-0.3) 		30.8
(3) 		21.7
(0.4) 		10.1
(-3) 		27.3
(2) 		20.6
(0) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179713_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12239
Sequence Type Exemplar sequence
Representative Public ID F46B6.11 NCBI
Target Description F46B6.11 /REP_DB=WormBase Gene ID /WP=CE05877 /TR=Q20452 /GB=CAA94827.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073129 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-39) (sru-39) mRNA, complete cds. 11/11 None
GENEFINDER00000041212 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9806058:9807091:1 9/11 None
F46B6.11 ENSEMBL cdna:known chromosome:CEL140:V:9806058:9807189:1 gene:F46B6.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041205 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9806057-9807189(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-39
Ensembl F46B6.11
Entrez Gene 185842 Entrez gene
SwissProt Q20452 EMBL-EBI
WormBase CE05877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94827 Hypothetical protein F46B6.11 [Caenorhabditis elegans] ref|NP_505530.1| Serpentine Receptor, class U family member (sru-39) [Caenorhabditis elegans] 1.0E-167
blast CAA94827 Hypothetical protein F46B6.11 [Caenorhabditis elegans] ref|NP_505530.1| Serpentine Receptor, class U family member (sru-39) [Caenorhabditis elegans] 1.0E-145
blast CAA94829 Hypothetical protein C50C10.1 [Caenorhabditis elegans] emb|CAA96614.1| Hypothetical protein C50C10.1 [Caenorhabditis elegans] ref|NP_505531.1| Serpentine Receptor, class U family member (sru-37) [Caenorhabditis elegans] 1.0E-108
blast CAA96664 Hypothetical protein R07B5.4 [Caenorhabditis elegans] ref|NP_505538.1| Serpentine Receptor, class U family member (sru-38) [Caenorhabditis elegans] 1.0E-101
blast CAA94829 Hypothetical protein C50C10.1 [Caenorhabditis elegans] emb|CAA96614.1| Hypothetical protein C50C10.1 [Caenorhabditis elegans] ref|NP_505531.1| Serpentine Receptor, class U family member (sru-37) [Caenorhabditis elegans] 1.0E-101
blast CAA96664 Hypothetical protein R07B5.4 [Caenorhabditis elegans] ref|NP_505538.1| Serpentine Receptor, class U family member (sru-38) [Caenorhabditis elegans] 3.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505530.1 6 21-43,112-134,155-177,205-227,250-272,282-304
F46B6.11 6 21-43,112-134,155-177,205-227,250-272,282-304
GENEFINDER00000041212 6 21-43,80-102,115-137,152-174,204-226,251-273
Sequence
Target Sequence 
>C. ELEGANS:179713_AT
atctcattcattaactcttgcgttttgcattcagagagttgcattattatatgctcatga
atatcacaaagataaaattgcaaaaatatttgatattgtcaaccctctcattatatttgt
tgggcatggttttggaataccgttcttttttgcatcaagctcttgttatcaaatggacga
accatttccatttggagcaattgtaatcacagctctacgccgggatatggtgaaaactta
cactattatttactcaattttttctaatacaaatataacactgacgattatattgacaat
catgatgtttgtaaagctgtatcataaacggaagataacttccgagttgcgccgaccagt
agatttaaaatcagaaaaagtattaacagctacaatgattctaattcttctccctgttgt
ggttccatcaattctgtcaattgcaaatcttttttcttcaaatttatatgcttatatgtt
tctcctgcgttgcattgcattggatgtccgagctcatattgtttcttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCATTCATTAACTCTTGCGTTT 517 31 381 Antisense
TGATATTGTCAACCCTCTCATTATA 136 565 471 Antisense
TACCGTTCTTTTTTGCATCAAGCTC 466 649 518 Antisense
GCAATTGTAATCACAGCTCTACGCC 583 321 577 Antisense
ACAGCTCTACGCCGGGATATGGTGA 525 109 589 Antisense
GAAGATAACTTCCGAGTTGCGCCGA 35 339 711 Antisense
AGTTGCGCCGACCAGTAGATTTAAA 602 55 725 Antisense
CTCCCTGTTGTGGTTCCATCAATTC 169 235 790 Antisense
TGCTTATATGTTTCTCCTGCGTTGC 503 579 849 Antisense
GTTGCATTGCATTGGATGTCCGAGC 406 439 869 Antisense
GTCCGAGCTCATATTGTTTCTTGTT 111 477 886 Antisense
Sequence Source Affymetrix Proprietary Database