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[179712_at]

Description R13F6.1 /REP_DB=WormBase Gene ID /WP=CE00720 /TR=Q21207 /GB=AAA50678.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_total > 87      4grp_total > 09      6grp_cgc > 59      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 66.6
(-3)
P 		113.9
(-2)
P 		98.3
(-2.3)
P 		339.3
(3)
P 		273
B 69.3
(-3)
P 		125.9
(-1.8)
P 		109
(-2.2)
P 		353.3
(3)
P 		284
C 69.3
(-3)
P 		96.1
(-2.3)
P 		113.6
(-1.9)
P 		307.1
(3)
P 		238
avr 68.4
(-3) 		112
(-2) 		107
(-2.1) 		333.2
(3) 		265

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 104.8
(-2.4)
P 		79.8
(-2.9)
P 		73.3
(-3)
P 		160.9
(-1.4)
P 		272.3
(0.7)
P 		395.4
(3)
P 		322
B 87.9
(-3)
P 		87.3
(-3)
P 		96.4
(-2.9)
P 		102.5
(-2.8)
P 		281.6
(-0.3)
P 		522.5
(3)
P 		435
C 117.9
(-2.2)
P 		108.5
(-2.3)
P 		48.1
(-3)
P 		112.7
(-2.3)
A 		238.5
(-0.9)
P 		585.2
(3)
P 		537
avr 103.5
(-2.6) 		91.9
(-2.7) 		72.6
(-3) 		125.4
(-2.3) 		264.1
(-0.3) 		501
(3) 		428
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 24.2
(-3)
P 		24.7
(-2.9)
P 		25.7
(-2.6)
P 		49.7
(3)
P 		26
B 22.1
(-3)
P 		31.1
(-2)
P 		25.3
(-2.6)
P 		75.3
(3)
P 		53
C 22.9
(-3)
P 		27.6
(-2)
P 		39.6
(0.5)
P 		51.8
(3)
P 		29
avr 23.1
(-3) 		27.8
(-2.2) 		30.2
(-1.8) 		58.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 19.3
(-2.8)
P 		28.4
(-2.1)
P 		16
(-3)
P 		40.8
(-1.1)
P 		82.2
(1.9)
P 		96.3
(3)
P 		80
B 30.6
(-2.7)
P 		29.1
(-2.8)
P 		23.4
(-3)
P 		27.1
(-2.9)
P 		114.4
(0.2)
P 		194.8
(3)
P 		171
C 43.7
(-2)
P 		33.1
(-2.3)
P 		12.2
(-3)
P 		22.7
(-2.7)
A 		77.2
(-0.9)
P 		195.9
(3)
P 		184
avr 31.2
(-2.4) 		30.2
(-2.5) 		17.2
(-3) 		30.2
(-2.5) 		91.3
(0.1) 		162.3
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179712_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7775
Sequence Type Exemplar sequence
Representative Public ID R13F6.1 NCBI
Target Description R13F6.1 /REP_DB=WormBase Gene ID /WP=CE00720 /TR=Q21207 /GB=AAA50678.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066094 NCBI Caenorhabditis elegans KNL (kinetochore null) Binding Protein family member (kbp-1) (kbp-1) mRNA, complete cds. 11/11 None
SNAP00000012104 ENSEMBL cdna:SNAP chromosome:CEL140:III:6869573:6870164:1 11/11 None
GENEFINDER00000012115 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6869573:6870164:1 11/11 None
R13F6.1 ENSEMBL cdna:known chromosome:CEL140:III:6869571:6870212:1 gene:R13F6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6869571-6870163(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol kbp-1
Ensembl R13F6.1
Entrez Gene 175957 Entrez gene
SwissProt Q95QB8 EMBL-EBI
WormBase CE00720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498495 KNL (kinetochore null) Binding Protein family member (kbp-1) [Caenorhabditis elegans] gb|AAK84562.1| Knl (kinetochore null) binding protein protein 1 [Caenorhabditis elegans] 2.0E-66
blast NP_498495 KNL (kinetochore null) Binding Protein family member (kbp-1) [Caenorhabditis elegans] gb|AAK84562.1| Knl (kinetochore null) binding protein protein 1 [Caenorhabditis elegans] 9.0E-66
blast CAE70096 Hypothetical protein CBG16539 [Caenorhabditis briggsae] 1.0E-23
blast CAE70096 Hypothetical protein CBG16539 [Caenorhabditis briggsae] 5.0E-23
blast CAE62366 Hypothetical protein CBG06450 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179712_AT
atgacaactccaagtcctcaggaaatatcaactgtcacattgaactctttgtcgaaggaa
gaacgaaagaaagcaattctggccttacaaacaaagaaaaacgaaatcaaattagttatt
gatgaacatcagaagaaattagctgagtttcgacaatcgattcctgatgggtgctgtgaa
atgttcgaaaacgaaaagaaaattcgtctgaaacatagttccacggccgaacttcttcca
catttacaaaaagtaggctcgagcagtgtcgacaaagagaaaatgatcaacaacattcgg
caaagagttgaagttcaagttgctgaccaggagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACAACTCCAAGTCCTCAGGAAA 200 41 13 Antisense
AACTGTCACATTGAACTCTTTGTCG 479 143 42 Antisense
GAAAGCAATTCTGGCCTTACAAACA 601 359 81 Antisense
AATTAGCTGAGTTTCGACAATCGAT 663 175 149 Antisense
GACAATCGATTCCTGATGGGTGCTG 348 363 164 Antisense
CTGATGGGTGCTGTGAAATGTTCGA 452 239 176 Antisense
GTCTGAAACATAGTTCCACGGCCGA 16 471 218 Antisense
GAACTTCTTCCACATTTACAAAAAG 596 345 241 Antisense
AAGTAGGCTCGAGCAGTGTCGACAA 443 157 263 Antisense
TGATCAACAACATTCGGCAAAGAGT 341 557 296 Antisense
AGTTCAAGTTGCTGACCAGGAGACT 291 63 324 Antisense
Sequence Source Affymetrix Proprietary Database