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[179711_s_at]

Description F17A9.4 /REP_DB=WormBase Gene ID /WP=CE09448 /TR=O16214 /GB=AAB65281.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 76      6grp_total > 08      4grp_total > 32      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 597
1 2 3 4 range
A 903
(-0.8)
P 		755.9
(-3)
P 		942
(-0.3)
P 		1165.9
(3)
P 		410
B 873.9
(-3)
P 		1050
(-0.5)
P 		1297.5
(3)
P 		1147.6
(0.9)
P 		424
C 929.1
(-3)
P 		1032.3
(-1.5)
P 		1352.9
(3)
P 		1010
(-1.9)
P 		424
avr 902
(-3) 		946.1
(-2.1) 		1197.5
(3) 		1107.8
(1.2) 		296

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 781
1 2 3 4 5 6 range
A 1313.2
(2.1)
P 		1057.6
(-0.5)
P 		1407.3
(3)
P 		1108.1
(0)
P 		805.6
(-3)
P 		1232
(1.3)
P 		602
B 1442
(3)
P 		1013.2
(-0.6)
P 		1268.3
(1.5)
P 		1184.7
(0.8)
P 		733.9
(-3)
P 		1047.7
(-0.3)
P 		708
C 1194
(2.5)
P 		1060
(1.1)
P 		992.1
(0.4)
P 		1153.6
(2.1)
P 		660.6
(-3)
P 		1243.2
(3)
P 		583
avr 1316.4
(3) 		1043.6
(0.2) 		1222.6
(2) 		1148.8
(1.3) 		733.4
(-3) 		1174.3
(1.5) 		583
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 328.8
(3)
P 		164.1
(-3)
P 		246.3
(-0)
P 		170.7
(-2.8)
P 		165
B 278.7
(0.6)
P 		259.3
(-1.4)
P 		300.7
(3)
P 		244.6
(-3)
P 		56
C 307.5
(-0.3)
P 		296.8
(-0.5)
P 		471.5
(3)
P 		170.3
(-3)
P 		301
avr 305
(1.6) 		240.1
(-1.1) 		339.5
(3) 		195.2
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 242.1
(-3)
P 		376.1
(3)
P 		306.5
(-0.1)
P 		281
(-1.3)
P 		243.1
(-3)
P 		300
(-0.4)
P 		134
B 501.7
(3)
P 		337.3
(-1.8)
P 		308
(-2.7)
P 		313.8
(-2.5)
P 		298.2
(-3)
P 		390.7
(-0.3)
P 		204
C 442.5
(3)
P 		323.4
(-0.1)
P 		252.5
(-2)
P 		232
(-2.5)
P 		213.8
(-3)
P 		416.2
(2.3)
P 		229
avr 395.4
(3) 		345.6
(0.9) 		289
(-1.4) 		275.6
(-2) 		251.7
(-3) 		369
(1.9) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179711_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11406
Sequence Type Exemplar sequence
Representative Public ID F17A9.4 NCBI
Target Description F17A9.4 /REP_DB=WormBase Gene ID /WP=CE09448 /TR=O16214 /GB=AAB65281.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072177 NCBI Caenorhabditis elegans F17A9.4 (F17A9.4) mRNA, complete cds. 11/11 None
SNAP00000021120 ENSEMBL cdna:SNAP chromosome:CEL140:V:6111305:6113156:-1 11/11 None
GENEFINDER00000021132 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6111632:6113156:-1 11/11 None
F17A9.4 ENSEMBL cdna:known chromosome:CEL140:V:6111561:6113303:-1 gene:F17A9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6111631-6113156(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17A9.4
Entrez Gene 178999 Entrez gene
SwissProt O16214 EMBL-EBI
WormBase CE09448 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264502_AT 12-oxophytodienoate reductase, putative at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65281 Hypothetical protein F17A9.4 [Caenorhabditis elegans] ref|NP_504578.1| F17A9.4 [Caenorhabditis elegans] 0.0
blast CAE64513 Hypothetical protein CBG09249 [Caenorhabditis briggsae] 0.0
blast CAE71844 Hypothetical protein CBG18886 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR001155 EMBL-EBI NADH:flavin oxidoreductase/NADH oxidase 3.8E-45
Sequence
Target Sequence 
>C. ELEGANS:179711_S_AT
tcgatttcgtagaactttccggtggaacttatgagaagctcgccttccatcatatgcgtg
attcgactcgtaaccgtgaagctttctttttagaattcgccgaaaagattcgtccagttt
tcaagaaaaccgttgtctacttgaccggtggcttccgtaccgtgaaagcaatggtagaag
ctattgaaaatggtgctacccaaggaatcggattgggacgtccaatcaccgccgagccag
atttaccaaagaaaattatcgagggattagttgcttcgtcaattaaaaatgcactcgatg
agaatgactttggaattacaaacttggctagcaatactcaaatgcaacaaatgggacgta
caacctaccaacagactaatcaaactccaacctacggaatcagtgacttttcgaatgaag
aaacagtaaatcgctataaagaagctctcaaggactacacagtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATTTCGTAGAACTTTCCGGTGG 183 603 845 Antisense
TATGAGAAGCTCGCCTTCCATCATA 20 657 874 Antisense
CATATGCGTGATTCGACTCGTAACC 272 215 895 Antisense
GACTCGTAACCGTGAAGCTTTCTTT 221 373 909 Antisense
CCGTTGTCTACTTGACCGGTGGCTT 481 259 974 Antisense
GTGGCTTCCGTACCGTGAAAGCAAT 710 489 992 Antisense
CGGATTGGGACGTCCAATCACCGCC 397 243 1053 Antisense
GAGGGATTAGTTGCTTCGTCAATTA 402 401 1105 Antisense
TGGGACGTACAACCTACCAACAGAC 405 543 1196 Antisense
CCAACCTACGGAATCAGTGACTTTT 596 275 1231 Antisense
GAAGCTCTCAAGGACTACACAGTAT 379 343 1285 Antisense
Sequence Source Affymetrix Proprietary Database