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[179710_s_at]

Description ZC487.4 /REP_DB=WormBase Gene ID /WP=CE07606 /TR=Q23352 /GB=AAA92541.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_high_8_8 > 29      6grp_highest_nonorm > 45      6grp_total > 83      4grp_total > 18      6grp_highest_sub > 04_05      6grp_cgc > 87      6grp_high1_sub > 04_05      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 122.4
(-3)
P 		131.8
(-2.8)
M 		182.7
(-1.5)
P 		356.6
(3)
P 		234
B 142.7
(-3)
P 		244.9
(3)
P 		161.2
(-1.9)
P 		192.5
(-0.1)
P 		102
C 202.1
(0.5)
P 		220.1
(2.2)
P 		165
(-3)
P 		228
(3)
P 		63
avr 155.7
(-3) 		198.9
(-0.5) 		169.6
(-2.2) 		259
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7871
1 2 3 4 5 6 range
A 241.6
(-2.9)
P 		143.7
(-3)
P 		153.6
(-3)
P 		5312.3
(2.4)
P 		5851.2
(3)
P 		1692.5
(-1.4)
P 		5708
B 127.3
(-3)
P 		157.9
(-3)
P 		232.1
(-2.9)
P 		4430.2
(2.6)
P 		4707.2
(3)
P 		1103.9
(-1.7)
P 		4580
C 150.2
(-3)
P 		159.1
(-3)
P 		222
(-2.9)
P 		3741.9
(-0.3)
P 		7997.8
(3)
P 		1135.2
(-2.2)
P 		7848
avr 173
(-3) 		153.6
(-3) 		202.6
(-3) 		4494.8
(1.3) 		6185.4
(3) 		1310.5
(-1.8) 		6032
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 44.6
(1.1)
P 		28.6
(-3)
M 		47.8
(1.9)
P 		52.2
(3)
P 		24
B 45.5
(-0.9)
P 		60.5
(3)
P 		37.4
(-3)
P 		41
(-2.1)
P 		23
C 66.9
(3)
P 		63.3
(2.2)
P 		57.5
(1)
P 		38.5
(-3)
P 		28
avr 52.3
(3) 		50.8
(1.9) 		47.6
(-0.4) 		43.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2555
1 2 3 4 5 6 range
A 44.5
(-3)
P 		51.1
(-2.9)
P 		33.5
(-3)
P 		1347.3
(1.6)
P 		1765.6
(3)
P 		412.1
(-1.7)
P 		1732
B 44.3
(-3)
P 		52.6
(-3)
P 		56.4
(-3)
P 		1173.4
(0.6)
P 		1912.5
(3)
P 		411.6
(-1.8)
P 		1868
C 55.7
(-3)
P 		48.5
(-3)
P 		56.5
(-3)
P 		752.5
(-1.3)
P 		2588
(3)
P 		380
(-2.2)
P 		2540
avr 48.2
(-3) 		50.7
(-3) 		48.8
(-3) 		1091.1
(0.1) 		2088.7
(3) 		401.2
(-2) 		2041
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179710_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12231
Sequence Type Exemplar sequence
Representative Public ID ZC487.4 NCBI
Target Description ZC487.4 /REP_DB=WormBase Gene ID /WP=CE07606 /TR=Q23352 /GB=AAA92541.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072305 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-9) (grl-9) mRNA, complete cds. 11/11 None
SNAP00000039162 ENSEMBL cdna:SNAP chromosome:CEL140:V:6732915:6734288:-1 11/11 None
GENEFINDER00000039166 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6732915:6734288:-1 11/11 None
ZC487.4 ENSEMBL cdna:known chromosome:CEL140:V:6732875:6734288:-1 gene:ZC487.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6732915-6734289(-) 95.19 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-9
Ensembl ZC487.4
Entrez Gene 179066 Entrez gene
SwissProt Q23352 EMBL-EBI
WormBase CE07606 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA92541 Ground-like (grd related) protein 9 [Caenorhabditis elegans] ref|NP_504706.1| GRound-Like (grd related) family member (grl-9) [Caenorhabditis elegans] 1.0E-120
blast CAE71941 Hypothetical protein CBG19005 [Caenorhabditis briggsae] 2.0E-71
blast CAE56046 Hypothetical protein CBG23612 [Caenorhabditis briggsae] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 7.4E-34
Sequence
Target Sequence 
>C. ELEGANS:179710_S_AT
ggaatcaacaatccagtccaacctccaccacctgttcagtatcagaatcagggacctcaa
tatattgaagctcccccacctccaccttctccaccaccgccgccaccaccaccaccgcca
caactgcaacagcaacaggttcaacttccactccaagatgcaacaactcttcggccatcc
actcttccaagtgaaacatatgttgagcttgaaaatccagaagccgttgtcaatgagcca
caaccgattcaagcacaaacagaagagccagcaactactcaaaaagccacagatgcacca
ccaccaccaatccttcaaaacaagattgagcgagtatttgagtctgaaccgaatagtggt
taccgtaaaccggttcgtcgacaggctcctccactcagtgagaaatgcaatgatgatcgt
cttcgtaaaattattgaacaaaacgttgatgacaatccatcgacttcgaagagaaagatc
cagaaagcagctgctgaagagatcggaggactgttcgatgtcatctgctctgcccatgat
ttctcctatctggctaacacccaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCAACAATCCAGTCCAACCTC 305 531 340 Antisense
CTCCACCACCTGTTCAGTATCAGAA 633 235 362 Antisense
CCTCAATATATTGAAGCTCCCCCAC 15 267 394 Antisense
GTTCAACTTCCACTCCAAGATGCAA 90 445 478 Antisense
AAGATGCAACAACTCTTCGGCCATC 577 153 494 Antisense
GTCAATGAGCCACAACCGATTCAAG 470 463 568 Antisense
TCAAAAAGCCACAGATGCACCACCA 691 629 618 Antisense
GAGCGAGTATTTGAGTCTGAACCGA 585 385 667 Antisense
AGGCTCCTCCACTCAGTGAGAAATG 151 55 722 Antisense
GACTGTTCGATGTCATCTGCTCTGC 574 375 848 Antisense
CTCCTATCTGGCTAACACCCAATTG 76 235 882 Antisense
Sequence Source Affymetrix Proprietary Database