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[179709_at]

Description EGAP9.2 /REP_DB=WormBase Gene ID /WP=CE09151 /TR=P91200 /GB=AAC25844.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 81      6grp_total > 92      4grp_total > 31      6grp_highest_sub > 04_05      6grp_cgc > 97      6grp_high1_sub > 04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 282.2
(2.8)
P 		199.2
(-1)
P 		154.8
(-3)
P 		286.9
(3)
P 		132
B 276.9
(3)
P 		190.3
(-2.9)
P 		189.3
(-3)
P 		201.1
(-2.2)
P 		88
C 325.3
(3)
P 		192.1
(-3)
P 		213.7
(-2)
P 		230.4
(-1.3)
P 		133
avr 294.8
(3) 		193.9
(-2.6) 		185.9
(-3) 		239.5
(-0) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 233.1
(-0.9)
P 		250.7
(-0.7)
P 		85.4
(-3)
P 		511.5
(3)
P 		484.6
(2.6)
P 		207.9
(-1.3)
P 		426
B 241.4
(-1.6)
P 		189.8
(-2.4)
P 		151.9
(-3)
P 		448.1
(1.5)
P 		543.7
(3)
P 		193.5
(-2.4)
P 		392
C 227
(-1.6)
P 		218.5
(-1.7)
P 		121.4
(-3)
P 		515.8
(2.2)
P 		575
(3)
P 		209.8
(-1.8)
P 		454
avr 233.8
(-1.3) 		219.7
(-1.6) 		119.6
(-3) 		491.8
(2.4) 		534.4
(3) 		203.7
(-1.8) 		415
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 102.8
(3)
P 		43.2
(-2.7)
P 		40.5
(-3)
P 		42
(-2.9)
P 		62
B 88.3
(3)
P 		47
(-2.5)
P 		43.9
(-2.9)
P 		42.9
(-3)
P 		45
C 107.7
(3)
P 		55.2
(-1.6)
P 		74.5
(0.1)
P 		38.9
(-3)
P 		69
avr 99.6
(3) 		48.5
(-2.3) 		53
(-1.8) 		41.3
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 43
(-1.9)
P 		89.2
(0.3)
P 		18.6
(-3)
P 		129.7
(2.2)
P 		146.2
(3)
P 		50.6
(-1.5)
P 		128
B 84
(-1.5)
P 		63.2
(-2.1)
P 		36.9
(-3)
P 		118.7
(-0.3)
P 		220.9
(3)
P 		72.1
(-1.9)
P 		184
C 84.1
(-0.9)
P 		66.7
(-1.6)
P 		30.9
(-3)
P 		103.7
(-0.2)
P 		186.1
(3)
P 		70.2
(-1.5)
P 		155
avr 70.4
(-1.4) 		73
(-1.3) 		28.8
(-3) 		117.4
(0.4) 		184.4
(3) 		64.3
(-1.6) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12405
Sequence Type Exemplar sequence
Representative Public ID EGAP9.2 NCBI
Target Description EGAP9.2 /REP_DB=WormBase Gene ID /WP=CE09151 /TR=P91200 /GB=AAC25844.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072270 NCBI Caenorhabditis elegans FUcosyl Transferase family member (fut-2) (fut-2) mRNA, complete cds. 11/11 None
SNAP00000042227 ENSEMBL cdna:SNAP chromosome:CEL140:V:6576577:6577481:-1 10/11 None
GENEFINDER00000042232 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6576577:6578391:-1 11/11 None
EGAP9.2 ENSEMBL cdna:known chromosome:CEL140:V:6576577:6578391:-1 gene:EGAP9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6576576-6578391(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fut-2
Ensembl EGAP9.2
Entrez Gene 184050 Entrez gene
SwissProt P91200 EMBL-EBI
WormBase CE09151 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504671 FUcosyl Transferase family member (fut-2) [Caenorhabditis elegans] gb|AAC25844.1| Fucosyl transferase protein 2 [Caenorhabditis elegans] 0.0
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 1.0E-147
blast AAB53053 Hypothetical protein T28F2.1 [Caenorhabditis elegans] ref|NP_491192.1| T28F2.1 [Caenorhabditis elegans] 1.0E-110
blast NP_504671 FUcosyl Transferase family member (fut-2) [Caenorhabditis elegans] gb|AAC25844.1| Fucosyl transferase protein 2 [Caenorhabditis elegans] 4.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 8.8E-7
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 8.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504671.1 1 16-35
EGAP9.2 1 16-35
GENEFINDER00000042232 1 16-35
Sequence
Target Sequence 
>C. ELEGANS:179709_AT
cgtctcttttttcttgtgaacggagtaaatttcttgtcattgatggtcaatattttcaga
gtttcaaatacttttcagcaatagattctctaataagaaaattgttgaaaccgccgatag
acgaagagattatactaaaaaagatgatcggaagaaaggatgagttaagattcaaaaact
gcgttcacattcgtcgtggagattatgtcaatgattttgaccacgccgaaacttcctcat
actttacgattcgagcgattgactacgtacatactttgcatcctggcttagtatatctaa
taagtgatgatccaaaatgggttcggaagcaaatagctgaacatcttgactatcatgatg
atgttaaaattatggaaacaccaataaatgcagcaataagagatttatatttttcacaag
ctcattgtgattccgttttgatcactgctccatcgtcaacgtttggttggtggattggat
acatgtccaaaaatcagtcaaatgtttattaccgagatattcaagaaactgatgatatgg
tcaaatataaaatggtggaggaagacttcttcccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCTCTTTTTTCTTGTGAACGGAG 569 237 452 Antisense
CAAAAACTGCGTTCACATTCGTCGT 466 189 624 Antisense
AATGATTTTGACCACGCCGAAACTT 351 157 661 Antisense
AACTTCCTCATACTTTACGATTCGA 38 139 681 Antisense
GATTCGAGCGATTGACTACGTACAT 216 433 699 Antisense
CTACGTACATACTTTGCATCCTGGC 437 223 714 Antisense
TTGCATCCTGGCTTAGTATATCTAA 277 701 727 Antisense
GATTTATATTTTTCACAAGCTCATT 324 429 853 Antisense
GTGATTCCGTTTTGATCACTGCTCC 120 485 878 Antisense
TGCTCCATCGTCAACGTTTGGTTGG 268 581 897 Antisense
TGGTGGAGGAAGACTTCTTCCCGCC 340 553 1004 Antisense
Sequence Source Affymetrix Proprietary Database